Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01603 ATGCTTCCATATTCCAAACTAAACCCAATGCTCTGTCGTTCTCTACAATCTCCTCACATACTCTTCTCTTTCCGATCATTGCCTTTTACTCTAATCCCAATCCCAAACCCTTCAATCCGATCCTCACCACACCGTCTCTTTTCTTCTTCGTGGCTATCTGAACCGGGAAACCCAATCATCCAATGGCCTTCAATACCCACACCAACCGCCCCTCGCAACCCCAAACCCAACCCCGACCCTAACCCTACACCCGACGCCACCTCTCCAAACTCAAACGCATTCTCCCTCATTTCCAACCTCTTCACGGACCCTTCCGTCTCGCCCGGTCCGGTCCTCCACGCCCAACTCGAACGGTTCGCCATCGAACCAGACCCGGCCCTCCTGCTCACCGCCTTCGATCGCTTCGGCTCGTCTCCCAAGCTCCTCCACTCGCTCTTCCTTTGGGCCCAGACACGGCCTGGGTTCAGGCCCGGCCCGAAGCTCTTTGACGCCGTCGTCAATGCGCTCGCGAAGGCGAGGGAGTTTGACGCCGCGTGGAAACTCGTTCTCGATCACGTCGATGGAGACGGGGAAGAAGAAAACGAAAGCTTGGTTTCAGTTGGGACCTTTGCCATCATGATTCGACGCTACTCGCGAGCAGGTATGTCGAAGCTTGCAATTAAAACATATGAGTTTGCTAAAAATAACAAGTCAATTGTGGATTCAGGCTCAGAAATGAGTTTATTTGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCTGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAGAAAGGAGTTGGACATAAGTTGGGTTCCTTCTATTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGGTCGAGGAAACTCAAGCAGGGTGAGAGGCTCTGGGCAGAGATGAAGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGGATGCGCCGTGTGGAAAAAGCACTTGAAATGGTTGGTGATATGACGAGAGAAGGAATTGCACCAAATGCAATTGTATACAACCCAATTATTGATGCTCTGGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGTTGGAACGATTTCATGTTTTGGAAATTGGCCCTACTGATTCAACATACAATTCTCTCATAAAAGGGTTTTGTAAGGCAGGAGATCTTGCAGGTGCCAGTAAGATTCTTAAAATGATGTTAAGTAGGGGTTTCATCCCAAGTCCTACCACCTATAACTACTTTTTCAGGTATTTTTCAAGATGTGGAAAAATTGAAGAGGGGATGAACCTGTATACAAAGATGATTGAGTCTGGTTATACCCCAGATCGCTTAACTTACCATCTTTTGCTGAAGATGTTATGTGAAGAGGGGAAGTTAGACTTGGCAGTTCAAGTTTGCAAGGAAATGAGGCATAATGGATATGACATGGATTTGGCTACCAGTACCATGTTTATTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAAGCTTTTCTCGAATTTGAGGACATGATTAGAAGGGGCATTGTTCCTCAGTATCTCACTTTCCAGAGAATGAAAGCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAGCTTTGCAAGTTGATGTCTTCTGTTCCTTATTCTACCAACTTGCCAAATACCTATGGCGGAGACAGAGAAGATGCTCATACACGAAGAAAATCTATAATTCGGAAAGCTAAAGCATTTTCTGACATGCTGAAGGATTGTAAGGACCCAAGTGAACTTCGTCGGTATAGAAATTCATCAGAAAATGCTGTCTCAAGCGCAAACTATATGATAGATGATATTGAGGGAAAAAGAAAACAGAATAAACATCTCTGA 1878 0.451 MLPYSKLNPMLCRSLQSPHILFSFRSLPFTLIPIPNPSIRSSPHRLFSSSWLSEPGNPIIQWPSIPTPTAPRNPKPNPDPNPTPDATSPNSNAFSLISNLFTDPSVSPGPVLHAQLERFAIEPDPALLLTAFDRFGSSPKLLHSLFLWAQTRPGFRPGPKLFDAVVNALAKAREFDAAWKLVLDHVDGDGEEENESLVSVGTFAIMIRRYSRAGMSKLAIKTYEFAKNNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWRKELDISWVPSIRVYNIMLNGWFRSRKLKQGERLWAEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMVGDMTREGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLIKGFCKAGDLAGASKILKMMLSRGFIPSPTTYNYFFRYFSRCGKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEGKLDLAVQVCKEMRHNGYDMDLATSTMFIHLLCKMHRLEEAFLEFEDMIRRGIVPQYLTFQRMKAELKRQGMTEMAQKLCKLMSSVPYSTNLPNTYGGDREDAHTRRKSIIRKAKAFSDMLKDCKDPSELRRYRNSSENAVSSANYMIDDIEGKRKQNKHL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01603 625 NCBIfam pentatricopeptide repeat 490 519 IPR002885 -
Spst8g01603 625 NCBIfam pentatricopeptide repeat 453 485 IPR002885 -
Spst8g01603 625 NCBIfam pentatricopeptide repeat 347 380 IPR002885 -
Spst8g01603 625 NCBIfam pentatricopeptide repeat 312 346 IPR002885 -
Spst8g01603 625 NCBIfam pentatricopeptide repeat 418 450 IPR002885 -
Spst8g01603 625 NCBIfam pentatricopeptide repeat 383 415 IPR002885 -
Spst8g01603 625 NCBIfam pentatricopeptide repeat 278 310 IPR002885 -
Spst8g01603 625 MobiDBLite consensus disorder prediction 62 89 - -
Spst8g01603 625 Pfam PPR repeat 446 478 IPR002885 -
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Spst8g01603 625 Pfam PPR repeat 244 262 IPR002885 -
Spst8g01603 625 Pfam PPR repeat 348 371 IPR002885 -
Spst8g01603 625 Pfam PPR repeat 490 517 IPR002885 -
Spst8g01603 625 SUPERFAMILY HCP-like 274 483 - -
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Spst8g01603 625 Gene3D Tetratricopeptide repeat domain 263 337 IPR011990 GO:0005515
Spst8g01603 625 Gene3D Tetratricopeptide repeat domain 338 407 IPR011990 GO:0005515
Spst8g01603 625 Gene3D Tetratricopeptide repeat domain 408 479 IPR011990 GO:0005515
Spst8g01603 625 Gene3D Tetratricopeptide repeat domain 480 551 IPR011990 GO:0005515
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Spst8g01603 625 MobiDBLite consensus disorder prediction 62 85 - -
Spst8g01603 625 Gene3D Tetratricopeptide repeat domain 110 261 IPR011990 GO:0005515
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Spst8g01603 625 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 137 550 - -
Spst8g01603 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Spst8g01603 625 Coils Coil 612 625 - -
Spst8g01603 625 Pfam PPR repeat family 382 425 IPR002885 -
Spst8g01603 625 Pfam PPR repeat family 274 323 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01603 Spst-Chr8 18465078 18467721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01603 134 572 Miscellaneous Gene Families AT4G11690 24.481 1.43e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01603 - - gmx:100793484 1022.31