Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01588 ATGGGTGACAAAAAGAAGAAGGCTCAGATGTTTGTAAAACTAGTGTCTGCTGCCGGCACTGGATTCTTCTACGTTAAGAGGAAGCCAAGGCAGTTTACAGAAAAGCTTGAGTTTCGAAAATTTGATCCCAGGGTTAATCGTCATGTTCTGTTTACAGAGGCTAAGATGAAAACTGTGGTAAGCACCAAGGCAGTGGAGCCAGGAAAGTACTTCCCCTTATCAGCTTTGGATCGGCACATGGAGAACAACCACATTAGACTGGTATGCTACTACCAATATTCAGGAGAAGCAGTGGAGCTTGGAGAAGTGACCAAGAAGTTGAGACACAGTTTGTCAGAGATGTTGACCCATTTTCCCATAGTGAGTGGAAGGTTGACAAGAGATGAGAGAGGGCATTGGAAGATCAAGTGCAATGACGCTGGGGTGAGAGTGGTGGAGGCCAAAGCCAAAGGGAGTGTGGAAGGGTGGCTAGCAAACCTTGATAGGGAAAAAGAACTCCAACTTGTGCACTGGGAGGATATGTTTCACAAGCCCTATTACTGGTCCACCTTTTATGTCCAGCTGACTGAATTCGAAGAAGGTGGATTAGCAATTGGCCTAAGCTGTGGCCATCTCTTGGCAGATTCCACTTCTGCAACTTCTTTCATGAAAGCATGGGCTGACATTTCAATGGCCAACAAAATGGTTACTCCTCCACTTTTCCACCCTTTACTTCTTACAAGACAAGGAATCACAAACCCCAATCATCACCCCCACATGGAGTTAATACACCACTACAAATCTTCAATTCAAAAACCCATTTCTTTGAAGGAAGCTAGGTACACAACCATTTCCATGGGCTTCTCAGCCCACATGGTCCAGGCCTGCATGTCTGCAGCCCAAACCAACAGCCCAATAACACCCTTTGCCGCCCTTGCAGCCCTGTTTTGGGTCTCATTGAGCAAAGTCAAGAAGGGCTTGAGAAATGGGCTTGTTGACATGTCCATATGCTTGGACATGAGAAAAGTCTTGGGCATAGATGTTGCCTTCTTTGGGAACTGCATGGTGTATAATAAGGTCCATGCAGTGGAAGGGGACACTAACAATTTCACATTTCCTCAAGCTGTTAGAGCAATAAGTCATGTTGTGGCTAAGATGGATTCTGAGAGAGTGATGGATTTGATCGATTGGCTGGAAAATGAAGGTGTGAATTCACCTACCATGATGAACAATCATGATCTTGTTTGTGCTAGCTTGGAGAGTGTGGACCCTTATTTAGCTGTGTTTCAAGATGGGTTCAAACCCATTCATGTTTCTTGTTATGTAGAACCAGTTTTGGGAGAAGGACAGGTTTTGATCCTCCCTGGCCCACCTGGGGAGGGTCCCTTAAGTAGGGTGGCCATGGTGACCCTAAGAGAAGAGGAAGCAATTAAGCTTTGTGAAGATGAACTTATTTCACAATTCTCTCCCACTACCATGATGAAATGTCAATGA 1473 0.4521 MGDKKKKAQMFVKLVSAAGTGFFYVKRKPRQFTEKLEFRKFDPRVNRHVLFTEAKMKTVVSTKAVEPGKYFPLSALDRHMENNHIRLVCYYQYSGEAVELGEVTKKLRHSLSEMLTHFPIVSGRLTRDERGHWKIKCNDAGVRVVEAKAKGSVEGWLANLDREKELQLVHWEDMFHKPYYWSTFYVQLTEFEEGGLAIGLSCGHLLADSTSATSFMKAWADISMANKMVTPPLFHPLLLTRQGITNPNHHPHMELIHHYKSSIQKPISLKEARYTTISMGFSAHMVQACMSAAQTNSPITPFAALAALFWVSLSKVKKGLRNGLVDMSICLDMRKVLGIDVAFFGNCMVYNKVHAVEGDTNNFTFPQAVRAISHVVAKMDSERVMDLIDWLENEGVNSPTMMNNHDLVCASLESVDPYLAVFQDGFKPIHVSCYVEPVLGEGQVLILPGPPGEGPLSRVAMVTLREEEAIKLCEDELISQFSPTTMMKCQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01588 490 FunFam 50S ribosomal protein L33 1 57 - -
Spst8g01588 490 Pfam Ribosomal protein L33 12 55 IPR001705 GO:0003735|GO:0005840|GO:0006412
Spst8g01588 490 Gene3D - 258 474 IPR023213 -
Spst8g01588 490 Pfam Transferase family 55 468 - -
Spst8g01588 490 Gene3D - 57 257 IPR023213 -
Spst8g01588 490 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 68 467 - -
Spst8g01588 490 NCBIfam 50S ribosomal protein L33 4 57 IPR001705 GO:0003735|GO:0005840|GO:0006412
Spst8g01588 490 SUPERFAMILY Zn-binding ribosomal proteins 4 55 IPR011332 GO:0006412
Spst8g01588 490 Gene3D Ribosomal protein L33 1 56 IPR038584 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01588 Spst-Chr8 18178413 18181505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01588 55 449 Acyl Lipid Metabolism Gene Families AT3G23840 24.757 4.22e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01588 - - gmx:100804090 687.952