Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01534 ATGTCTTTTGACCTCAACAAAGAGCTTGCTCTATTGGTCTTACAGTACTTTCATGAACAAAGTTTTAAGGAAGCAGCACGCATGCTTGGTAGTGAAAGTGGGTTATTCTTTGACTTGAAGTATTTTGAGGACATGGTGCTTAAGGGCAAGTGGGATGAGGCTGAGAACTATCTTTTGAGATTCACAAAGGTCAAGGACAATGACTACTCAATCAAAATATACTTTGAAATGAGGAAACAGAAATACTTTGAGGCTTTGGACAATAACGATCGTTACAAGGCCTTGGATATCCTCTTGAAGGATCTCAAAGTCTTTGCACAAGGGAATGAGAAGTTGATCAAAGACCTTAGTCACCTTTTGATAGTTGATAATATAAGGGAAATTAAACCAACATATCGAGATGCAATTTCTGCGAGGAAGAATTTGATGTTTGAAATTAAGAAAATTATAATTCAACATCCTCTTTTATGTGGAAAGCTGAAACTTCCGGACATTGAAATTCACAGACTACGCCATCTTCTCAATCAAAGCTTAAAATGGCAGAAGCATCAAAAGCCTGATCAAGAACCTGACCTTTTAAGGTATCATGACAGTAATTCCAATCCTTGTGCATCTGCTCTAACAAATTCAGGAATAGCTACGGAGTGGAAACTTTCAACTAGTGGAAGACCAAGTATGGATTCTGAAAAGGGAAACTGCAATGGAGTTTTGGGGGATGTGAAAAAGCTTGCAATTGAAGAATCCCATAACAAACCAAATAATGTATTTGAGATTGGTACATCATCTCAGTGCCAGTTCTTGCAGCTCCCTAAGCATCCTGAAGTAAAAAAGATTGTTAAACTGGCTTACAACAATGGGGGAAATTCACTTTTGGCATTGGCATCGAATGGTATTCATCTGATTTGGCTCTGGCCACGTACTGGCTTTAACTTGGATGGCAAGGCTAGTGCTCAAGTTTGCCCTCAATTGCAGCAACCAAAGGATGGCTTCCAAGTTATGATCAATGACCTTTCAAGTGTCAAATGTGAAAACCCAGTTTCCTGTTTTGCATTATCAAAACAGGGTGGATACGTCATATCAACATCAGGGGGCATGATCTCCTTGTTCAATATGGTGTCATATAAGACCCTGAGAACTATCATGTCTCCACCACCTATGGTAACATGCCTTGCCTTCTACCCTGAAGATAACAATATATTTGGTATTGGGTTTGATGACTCTAGCTTAATTATATATAATGTCCGTGATGATCAGGTTTTACACAAGCTTGAGGGTCACTCTAAAAGAGTTACTGCTCTAGCCTTCTCAAATACTTCCAATTTTCTAATATCTGGTGATGCAAATTCTCAGATCATTCAATGGAATACAAATGGGTGGGAAAAGCAGAAAGATATAAACTTGCAAATACACGAAAACCAAATGCCTGAATCTGACACTCAAATTCAGTTTCATCCAGATCAAATAAAGTTCCTTGTTGTATATGTTGGTCATCTTGCAATATATGACATAACAGGCCTAAGATGTGTCAATGAGTGGGTTCCAGAAGTTCCACAGCTTATCTCCCAAGCAACCTTCTCATCAGATGGTCACATTGTGTATTCCATTTTGGTTGATGGGACAGTCACAATATTTGATGCAACAAATTTTGAAATTTGTTGTAGGATTTCTACCTCTTCATATCTTCCTCCAATTTCAAGTTTGAGCATCTACCCAATTTCCATAGCTGCACATCCACAGAAACCAAACCAGTTTGTTGTGGGACTCACAGATGGTAGTGTTTATGTGTTTGAACCTCAGAAGCCAGGGGGTAATTGGATCAAAAACCATTGA 1830 0.3874 MSFDLNKELALLVLQYFHEQSFKEAARMLGSESGLFFDLKYFEDMVLKGKWDEAENYLLRFTKVKDNDYSIKIYFEMRKQKYFEALDNNDRYKALDILLKDLKVFAQGNEKLIKDLSHLLIVDNIREIKPTYRDAISARKNLMFEIKKIIIQHPLLCGKLKLPDIEIHRLRHLLNQSLKWQKHQKPDQEPDLLRYHDSNSNPCASALTNSGIATEWKLSTSGRPSMDSEKGNCNGVLGDVKKLAIEESHNKPNNVFEIGTSSQCQFLQLPKHPEVKKIVKLAYNNGGNSLLALASNGIHLIWLWPRTGFNLDGKASAQVCPQLQQPKDGFQVMINDLSSVKCENPVSCFALSKQGGYVISTSGGMISLFNMVSYKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSSLIIYNVRDDQVLHKLEGHSKRVTALAFSNTSNFLISGDANSQIIQWNTNGWEKQKDINLQIHENQMPESDTQIQFHPDQIKFLVVYVGHLAIYDITGLRCVNEWVPEVPQLISQATFSSDGHIVYSILVDGTVTIFDATNFEICCRISTSSYLPPISSLSIYPISIAAHPQKPNQFVVGLTDGSVYVFEPQKPGGNWIKNH 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01534 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 423 455 - -
Spst8g01534 609 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Spst8g01534 609 SMART ctlh 35 93 IPR006595 -
Spst8g01534 609 Gene3D - 341 606 IPR015943 GO:0005515
Spst8g01534 609 SMART WD40_4 416 455 IPR001680 GO:0005515
Spst8g01534 609 SMART WD40_4 373 413 IPR001680 GO:0005515
Spst8g01534 609 SMART WD40_4 333 370 IPR001680 GO:0005515
Spst8g01534 609 SMART WD40_4 563 597 IPR001680 GO:0005515
Spst8g01534 609 SMART WD40_4 505 545 IPR001680 GO:0005515
Spst8g01534 609 SMART Lish 5 37 IPR006594 GO:0005515
Spst8g01534 609 SUPERFAMILY WD40 repeat-like 338 599 IPR036322 GO:0005515
Spst8g01534 609 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
Spst8g01534 609 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 235 607 IPR027728 GO:0006355
Spst8g01534 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 455 IPR001680 GO:0005515
Spst8g01534 609 Pfam WD domain, G-beta repeat 418 455 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01534 Spst-Chr8 16453253 16458105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01534 352 509 Miscellaneous Gene Families AT5G08390 21.965 2.45e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01534 - - vun:114195532 680.248