Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01531 ATGGGGAAGCCGGCGGGTAAAAAGAAAGATCACGAGGTTCCCGCTCCTGCTCCGAAGGCGAACGGTCACCACCACCCGACAAAATCATGGGAAGAAAAACGCAGCGCGTCGTCGTCGTCGTCGTCGAAGATGTTGGACGAGGACACGGCGATGTTCATAAACATGTCGCACGAACTTCGGGAGGAAGGGAACAGGTTGTTTCAAAAGAAGGACCACGAGGGGGCGATGTTGAAGTATGAGAAGGCCCTCAAGCTTCTGCCGCGGAACCACATCGATGTGGCGCACCTCCACACGAGCATGGCCGTGTGCTACATGCAGCTGGGGTTGGGCGAGTACCCACGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGCTACACGAAGGCGCTGCTGAAGCGCGCGAAGTGCTACGAGGCGCTGAACCGCTTGGACCTGGCGATGCGCGACGTGCGCGTGGTGCTGAATTTGGAGCCCAATAACTCGACGGCGCTGGAGGTTTTGGATAGCTTGAGGGAGACGATGGAGGAGAAGGGGATTGTGATTGACGAGACGGAGATCGCTCTCGCCGCACTGAAGCAGCAGCCGGAGCCGCCGGTGGCGCGGCTGAGGAAGGTGGTGAGAGAGAAGATGAAGAAGAATAAGAAGGAAGCCAAGGGGGAGGATGAGGGAAAAGCGAAAAAGGTTATCGTTGAAGAGAAGGTTAAGGTTGAGAATTTAAAAAAAAAGGAGAAGGAAAAAGAGAAATTGGGGAAAGAAGAAAAAGGGAAATTGGGGAAGGAAGAAAAAGGGAAATTGGTGAAGGAAGAAAAGGGGAAATTGGGGAAGGATGATAAAGAGAAATCCGGGAAGGAAGAAAAAGAGAAATTGGGGAAAGATGAAAAAGGGGTTGTTACTAGGACTGTGAAGTTGATATATGGAGAAGATATTAGATGGGCGCAGTTGCCTGTGAATTGTGGAATTAGGTTGGTGAGGGATGTGATAAGGGATAGGTTTCCTGGATTGAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAGGGTGATTTGGTTACTATAACTAATACCGCTGAATTGAGGTTGGCTGAGACTTGTCATGTTCTTGGATCGATTCGGCTTTATGTGACGAAGGTTGAGCCGGAAGAGGAGCCGTTTTATGATGATGGGCTTGTGGGGGATGGTGGGAAGGTGAAGGTGGCTGAAAATGGGAATGGGGGTGTGGGGAAAGGGGTGAATAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAACCATGTTGGGTTTGATTCAGATGCGTATTTGGATATTCACGGGATTGGGATGAAGTTGTACTCGGAGGCCATGGAAGATGCAGTGACAAGTGAGGCTGCTCAGGAGTTGTTTAATATTGCAGGAAATATGTTTCAGGAGATGGCGGCTTTGGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAAGAGGGTGAGTTATCCGGAGGATGGATCAAGGGATTCTTCGTTTGAGTGTCTTCAGGTAGCGTATGAGTGGGCTCAGAAGGAGTACATGAATGCAGAGAAGAGATTTGGAGAGGCTGTGAAGATCAAACCCGATTTTTATGAAGGGTTTCTTGCTCTGGGGCATCAACAATTTGAGCAAGCAAGGCTGTGCTGGTGTTATTTGATTGCAACCGAGAAGGATTTGGAAGCAGGCCACTCGGATGAGGTTCTGCAGCTCTATAACAAGGCTGAGGACAGCATGGAGAGAGGCATGTTGATGTGGGAGGAGATTGAGGAGCGGCGATTGAATGGACTGTCCAAATCGGATAAGTATAAAGAGCAGCTAGAGAAAATGGGGTTGCATGGTCTTTTCAGGGATGTTTCTCCTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTATGTTGTATGAGCGTTCTGTCGTGGAGTATAAGCTAGGCCTGCCAACATGGGAGGAATGTGTAGAGGTTGCAATTGAAAAATTTGAACTGGCTGGAGCTTCTTCAACTGATATTGGGGTCATGATAAAGAACCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCGTTGTTCCGTCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAATTTTGA 2244 0.4889 MGKPAGKKKDHEVPAPAPKANGHHHPTKSWEEKRSASSSSSSKMLDEDTAMFINMSHELREEGNRLFQKKDHEGAMLKYEKALKLLPRNHIDVAHLHTSMAVCYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRLDLAMRDVRVVLNLEPNNSTALEVLDSLRETMEEKGIVIDETEIALAALKQQPEPPVARLRKVVREKMKKNKKEAKGEDEGKAKKVIVEEKVKVENLKKKEKEKEKLGKEEKGKLGKEEKGKLVKEEKGKLGKDDKEKSGKEEKEKLGKDEKGVVTRTVKLIYGEDIRWAQLPVNCGIRLVRDVIRDRFPGLKGVLVKYKDREGDLVTITNTAELRLAETCHVLGSIRLYVTKVEPEEEPFYDDGLVGDGGKVKVAENGNGGVGKGVNSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDAVTSEAAQELFNIAGNMFQEMAALALFNWGSVHMSRARKRVSYPEDGSRDSSFECLQVAYEWAQKEYMNAEKRFGEAVKIKPDFYEGFLALGHQQFEQARLCWCYLIATEKDLEAGHSDEVLQLYNKAEDSMERGMLMWEEIEERRLNGLSKSDKYKEQLEKMGLHGLFRDVSPDEADEQAARMRLQIYLLWGTMLYERSVVEYKLGLPTWEECVEVAIEKFELAGASSTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01531 747 Gene3D - 296 378 - -
Spst8g01531 747 SMART PB1_new 301 379 IPR000270 GO:0005515
Spst8g01531 747 MobiDBLite consensus disorder prediction 1 32 - -
Spst8g01531 747 ProSiteProfiles TPR repeat profile. 130 163 IPR019734 GO:0005515
Spst8g01531 747 MobiDBLite consensus disorder prediction 270 294 - -
Spst8g01531 747 MobiDBLite consensus disorder prediction 1 44 - -
Spst8g01531 747 ProSiteProfiles TPR repeat profile. 56 89 IPR019734 GO:0005515
Spst8g01531 747 Pfam PB1 domain 301 377 IPR000270 GO:0005515
Spst8g01531 747 PANTHER PROTEIN CLMP1 1 745 IPR044517 -
Spst8g01531 747 Gene3D Tetratricopeptide repeat domain 49 189 IPR011990 GO:0005515
Spst8g01531 747 SUPERFAMILY CAD & PB1 domains 301 386 - -
Spst8g01531 747 CDD PB1 303 376 - -
Spst8g01531 747 Coils Coil 232 252 - -
Spst8g01531 747 ProSiteProfiles PB1 domain profile. 301 379 IPR000270 GO:0005515
Spst8g01531 747 SUPERFAMILY TPR-like 51 175 IPR011990 GO:0005515
Spst8g01531 747 SMART tpr_5 56 89 IPR019734 GO:0005515
Spst8g01531 747 SMART tpr_5 130 163 IPR019734 GO:0005515
Spst8g01531 747 SMART tpr_5 94 129 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01531 Spst-Chr8 16388775 16391118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01531 46 179 Calmodulin-binding Proteins AT3G25230 28.671 1.03e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01531 K26538 - qsa:O6P43_015720 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01531 8 16388775 16391118 Spst9g00759 9 6492995 6495325 PCT