Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01501 ATGCATCCACAACTTGATGTGATAAAAATGTCCCTCCAAAGACTCATTTTCACACCCCTTTTGGTTGTATTCATGAGTATCCATTCTCATGCTCTTGTGGAGCCTTCTACTTGGAAACATGCACCAAACAAAGCAAGTGTTAGGGCTGCGTATTGGCCTGCAGGTGATGATCTTTCACCCTCCTCCATTGACACAAAATACTTCACTCACATCTACTATGCCTTCATCCAACAACACCCTCAACTCTTCCACCTTCGTGTCACTGAATTTGAGAAAAAATGGATTCCTCAATTCATCAACGGGCTCCGCGACCGTTACCCGCCTGTGAAAACTCTCCTGTCAATTGGAGGAGGTGGCAGCAACTCAACCGCCTTCTCCCTCATGGCCACCAACAAACACACCCGACAAGTGTTCATCAACTCCACCATCCACGTGGCGCGCCAATACGGATTCCACGGTCTCGATTTGGATTGGGAATTCCCAGAAAACGAGGTCGATATGTCTAACCTAGGTATCTTGTTCCAAGAGTGGCGTCAAGCTATAACGGTGGAAGCACAGTCCAGTAAAAAACCACCACTGCTTTTGACAGCTGCAGTTTACTATGCTTCCACCATTAAGCTTATCGGAAATGGGCCGAGAACATATCCAATCCAAGCCATTCGTGATTACTTGGATTGGGCCAGCCCAATGTGCTTTGACTACCACGGCGCTTGGGCTAACTTCACAGGCTTTAATGCTGCATTGTATGATCCAAAGTCCAATGTAAGTACCCGATATGGAATCAGGTCTTGGATCGAATCCGGTATGTCAGCCCAGAAGTTGGTTATGGGTTTACCATTATACGGGCGGGCGTGGACGCTCCGAGACCCGAATGTTCATGGGGTTGGAGCAGAAGCTGTTGGGGAAGCCATTGATACGGATGGTACTTTGGATTATGATGAAATTTTGGTGTTCAACAAAGAAAATGGTGCAACTATTGTGTATGATGATGTGGCTGTGTCTTTCTATTCTTATGCGGGTAAAACTTGGATCGGGTATGATGATGGACCATCCATAACAAAGAAGGTTCGGTTTGCTAGGTCTTCGGGTTTGAAGGGCTATTTCTTTTGGGCCCTTGGAAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCAAATGTTTGGGGACATTGA 1173 0.4638 MHPQLDVIKMSLQRLIFTPLLVVFMSIHSHALVEPSTWKHAPNKASVRAAYWPAGDDLSPSSIDTKYFTHIYYAFIQQHPQLFHLRVTEFEKKWIPQFINGLRDRYPPVKTLLSIGGGGSNSTAFSLMATNKHTRQVFINSTIHVARQYGFHGLDLDWEFPENEVDMSNLGILFQEWRQAITVEAQSSKKPPLLLTAAVYYASTIKLIGNGPRTYPIQAIRDYLDWASPMCFDYHGAWANFTGFNAALYDPKSNVSTRYGIRSWIESGMSAQKLVMGLPLYGRAWTLRDPNVHGVGAEAVGEAIDTDGTLDYDEILVFNKENGATIVYDDVAVSFYSYAGKTWIGYDDGPSITKKVRFARSSGLKGYFFWALGKDKDWTISRQASNVWGH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01501 390 Gene3D Glycosidases 61 376 - -
Spst8g01501 390 SMART 2g34 46 375 IPR011583 GO:0008061
Spst8g01501 390 FunFam Class V chitinase CHIT5b 280 346 - -
Spst8g01501 390 SUPERFAMILY Chitinase insertion domain 281 346 IPR029070 -
Spst8g01501 390 SUPERFAMILY (Trans)glycosidases 48 386 IPR017853 -
Spst8g01501 390 Gene3D - 280 346 IPR029070 -
Spst8g01501 390 PANTHER CHITINASE 41 387 - -
Spst8g01501 390 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 46 390 IPR001223 GO:0005975
Spst8g01501 390 CDD GH18_plant_chitinase_class_V 47 381 - -
Spst8g01501 390 Pfam Glycosyl hydrolases family 18 50 375 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01501 Spst-Chr8 15659681 15661333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01501 47 388 Glycoside Hydrolase AT4G19810 44.477 1.61e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01501 K01183 - gmx:100787511 680.248