Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01487 ATGTTTCTAAGAAACCCTTTATACACCAACCCAGAACCCTGTCAGCACCTAGTTGAGTACAAGCTCAAACATGGTTTCAATGGCTACAAAGTCATCCAAAAACTCCTTGTGACCTCCCCAATTAGAAAAATCACTGTGAAGAAACCCAACACAAAAGTACCCAGATGCAGTTTCTGTAATGACTGTGAAGGGAGGTTCTATTTGTGTCTGGCTTGCTCTTCATTTTCTTGTTTGAATCACACCCTTTTGCACCCCCAATTAGAAACTGGCCATACTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCTGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAATGGAGGTGGCAAGTGGTGTCACTGGGAATGAAAGCATTGGGCAGAGATTGACCAAGAGGAGGAGATTGGTTTCTGGGATTGGATTAGATTTGCAGAAATCAAAGTGTGAAGTTTCTACCAAAGATCTGAGAGCTAAATCGTGTTATCCTATGGGGTTGAGGGGGTTGAACAATCTGGGTAGCACGTGCTTCATGAGTTCAGTGCTCCAAGTGTTGCTTCAGGCACCTCCTCTCAGGGACTATTTTCTGAGTGGTGGACACCGCTTGGAATCTTGTCATCTTAGAAGAACCACAGATCTGATGTGTTTGCTTTGTGAAGTCAATACTATTTTTTCAGCTGTATATTCGGGGGATCAGAATCCATATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCAAGTTATGAGCAGCAGGATGCTCATGAGTTTTTCATCTCGATGTTAGATGCAATCCATGAGAAAGAGGGCAAAGCAAGGAATGGAAGCAAAGGTAATGAAGACTGTCAATGCATTGCTCATAGGGTGTTCTATGGGTTATTGAGATCAGATGTTACTTGTATGGCCTGTGGATTCACCTCAACCACCTATGATCCTTGTGTTGACATTTCACTTAACTTGGACACCAGTGTCTCTTCAAAAGAAAAGGGCAAAAAGCTTACCAAACGGAATGCGGATGGAAGTATGTCTACACTTTCTGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCAGGAAAAGCAGGACTCTTTGAAGCAAATGTCCATCAGAAAGCTTCCATTAGTACTTAGTTTACATGTAAAACGATTTGAGCACTCTTTTGTCAGAAAGTCTTCAAGAAAAATAGATCGCTACCTACACTTCCCATTTTCCTTAGACATGTCTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATTTATTCTTTTGGGGGTGATGAATCAGATATGTTTTCTGAGTTCGAAATTTTTGCTGTGGTGACACATTCCGGTACACTTGAATCTGGCCATTATGTTTCGTTCATGCGCATAAGGAATCAATGGTACAAATGTGATGATGCTTGGATAACAGAGGTTGATGAGGCTACAGTCAGAGCTTCACAGTGTTACATGATTTTCTATGCGCAGAAAAATCTGTACAATAAAGCAAATGGGTACCCGAGTCAAGCACCCAATTCCCCTGGCAGAGAGCTATTTTTTCCTATTGCTGGTTGTTGCTAG 1659 0.4201 MFLRNPLYTNPEPCQHLVEYKLKHGFNGYKVIQKLLVTSPIRKITVKKPNTKVPRCSFCNDCEGRFYLCLACSSFSCLNHTLLHPQLETGHTVFVDIERAELYCGVCCDQLYDPDFDQVVMSKHSMEVASGVTGNESIGQRLTKRRRLVSGIGLDLQKSKCEVSTKDLRAKSCYPMGLRGLNNLGSTCFMSSVLQVLLQAPPLRDYFLSGGHRLESCHLRRTTDLMCLLCEVNTIFSAVYSGDQNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKARNGSKGNEDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTSVSSKEKGKKLTKRNADGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCQEKQDSLKQMSIRKLPLVLSLHVKRFEHSFVRKSSRKIDRYLHFPFSLDMSPYLSSSILRARYGNRIYSFGGDESDMFSEFEIFAVVTHSGTLESGHYVSFMRIRNQWYKCDDAWITEVDEATVRASQCYMIFYAQKNLYNKANGYPSQAPNSPGRELFFPIAGCC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01487 552 Gene3D Cysteine proteinases 173 529 - -
Spst8g01487 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 132 IPR013083 -
Spst8g01487 552 SUPERFAMILY RING/U-box 13 118 - -
Spst8g01487 552 FunFam Ubiquitinyl hydrolase 1 173 528 - -
Spst8g01487 552 FunFam Ubiquitinyl hydrolase 1 8 129 - -
Spst8g01487 552 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 89 522 - -
Spst8g01487 552 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
Spst8g01487 552 ProSiteProfiles Zinc finger UBP-type profile. 36 130 IPR001607 GO:0008270
Spst8g01487 552 SUPERFAMILY Cysteine proteinases 175 522 IPR038765 -
Spst8g01487 552 Pfam Ubiquitin carboxyl-terminal hydrolase 180 520 IPR001394 GO:0004843|GO:0016579
Spst8g01487 552 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Spst8g01487 552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 523 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01487 Spst-Chr8 15069496 15072031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01487 180 522 Miscellaneous Gene Families AT2G24640 29.345 5.57e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01487 K11366 - gmx:100806347 1008.44