Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01436 ATGGATGCTTCGTCCTCCTCCAGTCAACCCGAATTCGACTACTTGTTCAAGCTTCTCTTGATTGGGGATTCTGGCGTTGGCAAAAGCACCCTGCTTTTGAGCTTCACCTCCGATACTTTCGAGGATCTTTCTCCCACCATTGGTGTAGACTTCAAAGTTAAATATGTTACAATTGGAGGAAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTATAGAGGTGCTCAAGGAATAATTATGGTATATGATGTTACACGGCGAGAAACTTTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACCTTTACTCAACAAATCAAGATTGCATCAAGATGCTTGTAGGAAACAAGGTTGATAAGGAAAGTGAAAGAGTTGTCACCAAAAAGGAAGGGGTAAACTTTGCAAGGGAATATGGATGTCTGTTTACTGAATGCAGTGCAAAAACCAGAGTCAATGTTGCACAGTGTTTTGATGAACTTGTAATGAAGATTCTGGAGACACCAAGTCTTTTGGCTGAGGGCTCATCTGGTGTAAAAAAGAACATCTTCAAGCAGAAAGCACCACAGTCTGATGCATCAAGTGGTGGCTGCTGCTCATGA 639 0.4053 MDASSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEGVNFAREYGCLFTECSAKTRVNVAQCFDELVMKILETPSLLAEGSSGVKKNIFKQKAPQSDASSGGCCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01436 212 PANTHER RAS-RELATED PROTEIN RAB 15 192 - -
Spst8g01436 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 187 IPR027417 -
Spst8g01436 212 ProSiteProfiles small GTPase Ras family profile. 8 212 IPR001806 GO:0003924|GO:0005525
Spst8g01436 212 ProSiteProfiles small GTPase Rab1 family profile. 11 211 - -
Spst8g01436 212 Gene3D - 9 211 IPR027417 -
Spst8g01436 212 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Spst8g01436 212 NCBIfam small GTP-binding protein domain 14 172 IPR005225 GO:0005525
Spst8g01436 212 CDD Rab18 16 177 - -
Spst8g01436 212 SMART arf_sub_2 4 181 - -
Spst8g01436 212 PRINTS Transforming protein P21 ras signature 56 78 - -
Spst8g01436 212 PRINTS Transforming protein P21 ras signature 120 133 - -
Spst8g01436 212 PRINTS Transforming protein P21 ras signature 16 37 - -
Spst8g01436 212 PRINTS Transforming protein P21 ras signature 38 54 - -
Spst8g01436 212 PRINTS Transforming protein P21 ras signature 155 177 - -
Spst8g01436 212 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Spst8g01436 212 SMART ras_sub_4 13 180 - -
Spst8g01436 212 FunFam Ras-related protein RABC1 9 211 - -
Spst8g01436 212 SMART ran_sub_2 21 206 - -
Spst8g01436 212 SMART rab_sub_5 16 180 - -
Spst8g01436 212 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01436 Spst-Chr8 13552219 13560774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01436 17 113 EF-hand Containing Proteins AT5G27540 25.773 1.44e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01436 K07910 - gmx:121173094 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01436 8 13552219 13560774 Spst8g01436 8 13552219 13560774 ECH