Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01403 ATGGCAAGTGTTGAAAAGATTCACAAGGCACAAAGGACAGAAGGTCTAGCTACAATCTTGGCAATAGGAACTGCCACTCCTCCCAATTGTCTCCTACAAAACACTTATTCTGATTATTATTTTCGTGTCACAAAGAGTGAACATAAGACAGAACTCAAACAAAAATTTGATCGCATATGCAAGAATTCAAATATTAAGAAGCGATACATGATCCTGACAGAAGAGATGTTGAAGAAGCATCCCAACATTGGTGAACACATGGCACCTTCATTGAATGCAAGGCAAGAGTTCTTGGTAACGGAAGTGCCAAAGCTAGGAAAAGAAGCAGCAGCAAAGGCCATGAAAGAATGGGGTCAACCCATGTCTAAAATAACTCACCTCATATTCTGCACATCAAGCGGTAATGACATGCCTGGTGCTGACTTCCAACTCACCAAACTCTTAGGGCTTAACCTTAACGTGAAGCGTTATATGATATACCAACAAGGATGTTATGCTGGTGGAACCGTTCTTCGTTTGGCCAAAGACTTGGCTGAAAACAATAAAGGTGCTCGTGTGTTAGTAGTTTGCTCAGAAAGCATGTTATTCACTTTTCGTGGTCCAAGTGAAAATCATATTGATAACCTTGTGGGGCAATCCCTCTTTGGAGATGGTGCTGCAGCTGTTATTATTGGTTCAGACATAATACCCAATATTGAGAAGCCTTTGTTTCAATTAGTGTGGACTTCACAAACCATAGTGCCAAATACTGAAGAGGCGCTAAAATTGCACCTTGGTGAAGATGGTTTGTCATTTCATATTCTCAAGGGTGTTCCTTACCTTATTGCAAACAACATTGAGAATGTTTTAGTGGAGGCCCTTCAGTCGTTAAACATATCTGATTATAACTCCATGTTTTGGGTAGTGCATCCTGGTGGACGAGCCATTCTAGACCTAATTGAAGAAAAGTTGGGTTTGAAGCCGGAAAAACTGCGAGCCAGTAGACACGTTCTCAGTGAGTATGGTAATATAGTGAGTGCTTGTCCATTTTTCATAATGGATGAAATGAGAAAGACGTCAAAAGCAATTGATCTTTCAACAACCGGAGAAGGTTTTGAGTGGGGTGTGCTCTTTGGTTTTGGACCTGGACTCACTGTTGAGACTGTTTTACTACGTAGTGTGTTGCTCTAA 1170 0.4103 MASVEKIHKAQRTEGLATILAIGTATPPNCLLQNTYSDYYFRVTKSEHKTELKQKFDRICKNSNIKKRYMILTEEMLKKHPNIGEHMAPSLNARQEFLVTEVPKLGKEAAAKAMKEWGQPMSKITHLIFCTSSGNDMPGADFQLTKLLGLNLNVKRYMIYQQGCYAGGTVLRLAKDLAENNKGARVLVVCSESMLFTFRGPSENHIDNLVGQSLFGDGAAAVIIGSDIIPNIEKPLFQLVWTSQTIVPNTEEALKLHLGEDGLSFHILKGVPYLIANNIENVLVEALQSLNISDYNSMFWVVHPGGRAILDLIEEKLGLKPEKLRASRHVLSEYGNIVSACPFFIMDEMRKTSKAIDLSTTGEGFEWGVLFGFGPGLTVETVLLRSVLL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01403 389 SUPERFAMILY Thiolase-like 1 230 IPR016039 GO:0016746
Spst8g01403 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Spst8g01403 389 CDD CHS_like 16 384 - -
Spst8g01403 389 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Spst8g01403 389 Gene3D - 236 389 IPR016039 GO:0016746
Spst8g01403 389 FunFam Chalcone synthase 1 236 388 - -
Spst8g01403 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 5 387 IPR011141 GO:0009058|GO:0016747
Spst8g01403 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Spst8g01403 389 Pfam Chalcone and stilbene synthases, N-terminal domain 5 227 IPR001099 -
Spst8g01403 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Spst8g01403 389 Gene3D - 1 235 IPR016039 GO:0016746
Spst8g01403 389 FunFam Chalcone synthase 2 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01403 Spst-Chr8 13137401 13138687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01403 135 387 Miscellaneous Gene Families AT3G52160 26.154 1.34e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01403 K00660 - gmx:732575 572.392