Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01375 ATGTCGATCTTCGAGTACAACGGAAGCGCCGTCGTGGCCATGGTCGGCAAGAACTGCTTCGCCATTGCCAGCGACCGAAGGCTCGGGGTTCAGCTCCAAACCATAGCCACCGATTTCCAACGCATTTCCAAGATTCACGATAAGCTCTTCATCGCTCTCTCTGGCCTTGCCACTGATGCTCAGACTCTGTATCAGCGTCTCGTTTTCCGGCACAAACTGTATCAGCTTCGTGAAGAGAGGGATATGAAGCCGGAGACCTTTGCCAGCTTGGTCTCTGCCTTGCTCTATGAGAAAAGGTTTGGTCCATATTTTTGCCAACCTGTAATTGCTGGATTAGGTGATGAAGACAAACCATTCATTTGCACAATGGACTGTATTGGAGCAAAGGAGCTTGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGGAACCGGAGGATTTGTTTGAGACCATCTCCCAAGCACTGCTAGCGTCCGTAGACCGTGATTGTTTAAGTGGTTGGGGAGGACATGTCTATCTTGTGTAA 570 0.4895 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIALSGLATDAQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLGDEDKPFICTMDCIGAKELAKDFVVSGTASESLYGACEAMFKPDMEPEDLFETISQALLASVDRDCLSGWGGHVYLV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01375 189 CDD proteasome_beta_type_3 6 189 IPR033811 GO:0019774|GO:0043161
Spst8g01375 189 ProSitePatterns Proteasome beta-type subunits signature. 12 59 IPR016050 GO:0005839|GO:0051603
Spst8g01375 189 PANTHER METALLOPROTEASE TLDD 4 183 IPR023333 -
Spst8g01375 189 ProSiteProfiles Proteasome beta-type subunit profile. 8 189 IPR023333 -
Spst8g01375 189 Pfam Proteasome subunit 7 188 IPR001353 GO:0005839|GO:0051603
Spst8g01375 189 FunFam Proteasome subunit beta 1 189 - -
Spst8g01375 189 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 189 IPR029055 -
Spst8g01375 189 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 189 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01375 Spst-Chr8 12872608 12876730 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01375 K02735 - gmx:100527027 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01375 8 12872608 12876730 Spst8g01375 8 12872608 12876730 ECH