LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g01356	ATGGCACTAACATCTTCAAGAGTTGATGAGAAGCAACTAGAATATCCACGTATACTTTATCATATGTGTGGTTATGATGTTCTAGAGCATGGGGAAAGTGAGAACAAGGGACACGTGTCAAATTGTTTGGAACGTCTCATTCTATCCACATTCGAGCAGCATATGGTTCAACATGACATGAAGTTGCTTAATAAGAACAAAATGGTCTTTGCAGAATGCAAGGAGGACCACACCACCGACAAAGTTGGGTTGGTTCACTTAGCCTTGGCCTTAAAGGTCAAAGCTAATGTTAGATTGTTGGACCCAATGATGGATAAGAAGAGATGGCCGTGGAAGAGGAAGTCTTCTGAGAAGAGCCCCGGTGAAACTGAAAGTTCAGGATCTGTTTCTTCTCATTCTGAGAGGTACTCAGATGAACAGGAGGCATTGAAGGAATCTCCTAGTAGAATCAATCACTCAACTGATGTCACATCAAAGGCTACGGTCTATGCAGAAGAAGTTAACCATAGTTCATTCATCAATGAACAATTGCCTGAAGAAGTCACCTCTAAATCTGTACCTGCTACAGGCATTACAAGTGATGCTTCATCAGTAAAAGACGAAAATGGAGAAAATGAAAATATAAAAGATGCTAAGGAAGATGTTCTAAATGATGGGTTGAGGAACATGTCCGAGAAGCTATCTGCTGCACTAGTGAATGTCAATGCGAAAGAAGACTTGGTTAAGCAGCATGCCAAAGTTGCTGAAGAAGCCATTGCAGGCTGGGAAAAGGCTGAAAATGAAGTGGCAGTTTTAAAGAAACAACTTGACACAGTCATTCTCAGGAATTCAGTTTTGGAAGATCGAGTCACTCATCTAGATGGAGCACTTAAGGAGTGTGTTAGGCAGCTAAGACAGACAAGAGAAGAGCAAGAAGAGAATATTTATGATGCTGTTGCAAAAAAGACCCAAGAATTGGAATCAGCGAAAATTAAACTTGAGAACAAACTCACTGAGCTACAAAAAAGATTAGATGCTTCAGAAGCCAGGTCTTCTGTTGACTTTGATATGTGTCAAAAGCTAGAATGTTTGGAGAAAGAGAACATTGCTCTCAGGCAAGAGATCCTAGTTCAATCAGAAGAGCTGGAAATCAGGACAATTGAGAGGGATCTAAGCACTCAAGCTGCTGAGACAGCTAGCAGGCAGCATTTGGAAAGCATCAAGAAAGTAGCCAAGCTTGAAGCTGAATGCCGGAGATTGAGGAGTGTTGCTTCAAGAGCTTCCTTAGTTAATGAGCATAAAGCTATTGTTCAGTCCTCATTCAGTGTTGAATCTCTAACTGATAGTCATTCAGACAGTGCAGAGCGGCATACTGTAGTGGAAATTGAAGCTCACAAGATGAATGGCTCAGAGCCAAACAAGTGTGAGCCAAGTTGTTCCGACTCGTGGGCATCTGCACTAATTGCTGAGCTTGATCAGTTCAAGAATGAAAAGTGCAGACAAACTCCATCCAGTTCTGTTAAAATTGAGTTCATGGACGATTTTCTTGAAATGGAAAGACTTGTTGCATTGCCTGAAACTAAGAAGGAAAGCTTGGTCCAAGAGTCAGTTGTTACTAATCAATGCACCAACAAAGAAAGCTCTCGCATTGTAGAGTTCGAGATCATGAATCAGCAAATCGATGAGTTAAAAGATAAGTTAGAGAAGGTGGAAGCTGATAAAGCTGAACTAGAGATAGCTTTGATGAAAAGTGAAGAGTGTATTGAAGAGTCACAAGTTCAGTTGAGGGAAGCAGAAGAGAAATTGGAGGAGTTGCAAAGAGAGCTAGAAAATGCCTACAATTCAAAGCAAAGGGTAGAAGATCACCTACTGGACATGGTGACTGAGGCTCAAACATTATCAGTGAAGGTTGAATTCTTAGAAGCTGAGGTTGATAAGGAGAGGGCCGTGTCAAGTGAGATTGCAATGAAGTTTAGGGACTTGGAGGAAGAGTTAGAAAGAAAATCTGCAGAGGTTGACACACTAGAAGCTGAACTTGATAAGAAGAAGGATGTGTCAAGTGAAATTGCAATGAAGTATAAGCAGCTGGAGAAAGACCTAGAAAGTAAATCCACAAAGGTTGAGTTGTTAGAAGCAGAGGTTGCGAAGGAAAGGGAGGAATCAGATAAAATTGCAAAAAAGTTCAAGGACATGGAGGAAGAGCTAGACTGCAAATCTGCAAAGGTTGACATATTAGAAGCAGAAGTTGGTAAGGAAAGGGAAGAATCAGATAAACTTGCAAAAATGTTCAAGAACCTGGAGGAAGTGCTAGAAATCAAATCTGCTAAGGTTGACATATTAGAAGCAGAAGTTGATAAGGAAAGGGAAGAATCAGATAAAATTGCAAAAAAGTTCAAGAACCTGGAGGAAGTGCTAGAAAGCAAATCTGCTAAGGTTGACATATTAAAAACAGAAGTTGCTAAGGAAAGGGCGGAATCAGATAAAATTGCAAAAAAGTGTAAGGACCTGGAGGAAGTGCTGAAGAGCAAGTCTGCAAAGGTTGAGTTATTAGAAGCAGAAGTTGATAAAGAAAGGACTGTGTCGGATGAAATTTCAATGAAGTGTAAGGATCTGGAAGAGAAGCTAGAAAGCAAATCTGCAAAGGTTGACGTGTTAGAAGAAGAGGTTCATAAGGAGAGGACAACTTCAAAAGAAATTGCAATGAAATGTAGGGAATTGGAGGAAGAGTTGCTTAGGTCAACTCCTAGCTCATATGGAGAAAAGAAGATTAAGCAGGAGGACCTAGCATTAGCTGCTGGAAAGCTTGCTGAGTGCCAGAAAACAATAGCATCTTTGGGAAATCAGTTGAAATCCCTGGCTACACTAGAAGATTTCCTCATTGACACTGCAAGCATTCCTGCTAGTCCATCACTCATTGCCCAGGCTGGTGGGGAAATGTGGAAGTTGCATTCAAATGGCACATTTTCACCTAAAAGAGATTCCATTTCTTCAAGGTTGGCTGATGGTAGCTCTTGTCCATCCTCAAACAAAAATATGGAGACCTCGCCGGTTTCGTCATCTTCGTCAACTTCACCAGCCATACCAAATCATGTCAGTTCTGAGAGGAGTAGAAACGGTTTTGCAAAATTTTTCTCCAGAACCAAGAGTGGGATTCGGCTAGAAATTTAG	3147	0.4099	MALTSSRVDEKQLEYPRILYHMCGYDVLEHGESENKGHVSNCLERLILSTFEQHMVQHDMKLLNKNKMVFAECKEDHTTDKVGLVHLALALKVKANVRLLDPMMDKKRWPWKRKSSEKSPGETESSGSVSSHSERYSDEQEALKESPSRINHSTDVTSKATVYAEEVNHSSFINEQLPEEVTSKSVPATGITSDASSVKDENGENENIKDAKEDVLNDGLRNMSEKLSAALVNVNAKEDLVKQHAKVAEEAIAGWEKAENEVAVLKKQLDTVILRNSVLEDRVTHLDGALKECVRQLRQTREEQEENIYDAVAKKTQELESAKIKLENKLTELQKRLDASEARSSVDFDMCQKLECLEKENIALRQEILVQSEELEIRTIERDLSTQAAETASRQHLESIKKVAKLEAECRRLRSVASRASLVNEHKAIVQSSFSVESLTDSHSDSAERHTVVEIEAHKMNGSEPNKCEPSCSDSWASALIAELDQFKNEKCRQTPSSSVKIEFMDDFLEMERLVALPETKKESLVQESVVTNQCTNKESSRIVEFEIMNQQIDELKDKLEKVEADKAELEIALMKSEECIEESQVQLREAEEKLEELQRELENAYNSKQRVEDHLLDMVTEAQTLSVKVEFLEAEVDKERAVSSEIAMKFRDLEEELERKSAEVDTLEAELDKKKDVSSEIAMKYKQLEKDLESKSTKVELLEAEVAKEREESDKIAKKFKDMEEELDCKSAKVDILEAEVGKEREESDKLAKMFKNLEEVLEIKSAKVDILEAEVDKEREESDKIAKKFKNLEEVLESKSAKVDILKTEVAKERAESDKIAKKCKDLEEVLKSKSAKVELLEAEVDKERTVSDEISMKCKDLEEKLESKSAKVDVLEEEVHKERTTSKEIAMKCRELEEELLRSTPSSYGEKKIKQEDLALAAGKLAECQKTIASLGNQLKSLATLEDFLIDTASIPASPSLIAQAGGEMWKLHSNGTFSPKRDSISSRLADGSSCPSSNKNMETSPVSSSSSTSPAIPNHVSSERSRNGFAKFFSRTKSGIRLEI	1048

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g01356	1048	MobiDBLite	consensus disorder prediction	109	157	-	-
	Spst8g01356	1048	MobiDBLite	consensus disorder prediction	180	205	-	-
	Spst8g01356	1048	MobiDBLite	consensus disorder prediction	134	148	-	-
	Spst8g01356	1048	PANTHER	FILAMENT-LIKE PLANT PROTEIN 4	104	664	-	-
	Spst8g01356	1048	MobiDBLite	consensus disorder prediction	983	1027	-	-
	Spst8g01356	1048	Coils	Coil	686	741	-	-
	Spst8g01356	1048	Coils	Coil	644	678	-	-
	Spst8g01356	1048	Coils	Coil	354	374	-	-
	Spst8g01356	1048	Coils	Coil	294	343	-	-
	Spst8g01356	1048	MobiDBLite	consensus disorder prediction	180	198	-	-
	Spst8g01356	1048	Coils	Coil	854	888	-	-
	Spst8g01356	1048	SUPERFAMILY	Tropomyosin	715	942	-	-
	Spst8g01356	1048	SUPERFAMILY	Tropomyosin	547	742	-	-
	Spst8g01356	1048	Coils	Coil	546	615	-	-
	Spst8g01356	1048	Coils	Coil	756	846	-	-
	Spst8g01356	1048	Pfam	Filament-like plant protein, long coiled-coil	469	537	IPR008587	-
	Spst8g01356	1048	Pfam	Filament-like plant protein, long coiled-coil	350	417	IPR008587	-
	Spst8g01356	1048	Pfam	Filament-like plant protein, long coiled-coil	237	342	IPR008587	-
	Spst8g01356	1048	Pfam	Filament-like plant protein, long coiled-coil	825	947	IPR008587	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g01356	Spst-Chr8	12702938	12715496	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g01356	-		-	gmx:100784260	1419.83

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g01356	8	12702938	12715496	Spst8g01356	8	12702938	12715496	ECH