Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01342 ATGGACAACTCCTCGCTGCAATTCGTCTCCGAAATCGGAAGACACCTCGCTCAACGAAGTCGTCCCAACAAGGACTTCATTGTCAAATCACTCGGAGTAAGTTTCGCCTTCTTCGTTACCTTCTCTTTCACCAATGCACCTCCTGCACAGATTATACAGATACCTGTGATTTCTATCAAAGCTGCAAATGCTTTGGCTCAGATAAAACAGTCTCCTCAACCGCGGACGGCCAAGGAATTACAAGCTGCTAAGAAACAAGAAGATGCTCTAAAGCCCCTGGCAAATGCTGTGGTTTGTGGTGGTCTGCTTCAACATGCAGATAAAGAAGTTAGGCTTCTGGTTGCTATGTGTGTCACCGAGCTCTTTAGACTCATGGCACCTGAACCGCCTTTCGAAGACAAGCATTTGAGGGATGTATTTAAACTCATCATTAGTTCATTTGAGGATCTAGCTGATACCGCAAGTCCATTCTTTTCCAAAAGGGTTAAAGTATTGGAGATAATGGCTCAATTAAAGTGTTGTGTGATAATGCTAGAGATTGACTGCTTGGACCTGGTTCTCCAGATGTTCAATATTTTCTTCTCAATTGTGAGGTTGAGCTTAAGATCTACCTACTCCCTCTCTTTCTCCTCCTTTTGCTTGGCTTCTTTACCTGATTTCTGGGCTTATTATCTAATTGAGGAAAACTTATATTCTGGAATGCAACAAGATGAACACCTTCTCATTAGTGCCATGACTTCTATAATGATAAACATTTTATATGAGAGCGAGGAGGCTTTTCAGCAACTTTTTGGAGTAATTTTACAAAATCTTGTGAAGCAAAAAAAGGATGCAATTTTAGCTGCTGAAAAACTTGCGGCATCAGTCATCAAAACTTGTGCTCAAGAGGATGACCTGAACCTTCTAGTTTGTGGGTTCTTAGCTTCTTGTATTCACGACAGAGATGCTATGGGCAGCGGGCTTAAAGATTATTACTATGAAATCTTCTCAAAGGTTTTCCAGTGTGCGCCTCAGATGCTTCTGTCTGTCATCCCAACTTTAATTAAAGAATTATCGGCTGATGAGGTGGATGTTCGGATAAAAGCTGTAAATTTGGCGGGGAAGCTTTTTGCATTGGAACATCGAGTTGCTCAGAAGTATCATGATCTTTTTGTGGAGTTTTTGAAAAGATTTTCTGATAAATCTGTGGATGTTAGGATTAGTGCTCTGCAATGTGCTAAAACTTTCTATTTAGCAAATGCCTATGATGGTACAGAATCACGTGAAGTTATGACAGCTTCTGTTGAAGATCGACTATTAGACTCTGATGAACAAATAACTGTTAGAAAGAGTGCCCTCCAAAAGTTGATAAAGGTGTATCGAGATTACTGCAAGAAATGTTATGAAGGTAGCATGACAATCAGTAGTCACTTTGAAGAGATTCCCTGTAAAATTATGATGCTGTGCTATGATAAAGATTGTAAAGAGTTCAGGTTCCAGAACATGGAATTTGTTCTTGCTGATGATCTGTTCCCTGAGGATCTTCCAGTTGAGGAAAGGACAAACCATTGGATACACATGTTTTCCCTTTTCAGTTTTCCTCATGAAAAGGCACTGGATGCTATTTTGACTCAAAAGAGAAGGTTCCAAAATGAAATGAAAAATTATTTGGCTATGCGGAAGAAATTGAAGGAAATTTGTCCAGAAGAAATGGAGAAGAAGATTGAAAGTATGTTTACAAAGATGGCAGCATTCTTCCCTGATTCTCACAAAGCTGAGGAGTGTCTGCATAAGTTAAACCAAATTAAAGATATTAGCGTGTTTAAATTACTTGAAAAATTGTTGGAGGAACAAGCCTTCACAACGATGGGACAAACTATGAAAGATAAACATCTGGCTATTGTTCGATATTGCCCCTCTATGCTGAAAGGCCTGGAACAACAGTTCCAAATGTTGTTGGAACAGAAAAGTTCTGTTAATGACAAGCTGATCGAGGTTATAGCAAAGGCAGTCTGTAATATGTCTTTCAATCATAGTGATATTTATCCATTTTTAAAGAGAATTTGCTTGGACGGAACACGCAGACAGGCCAAATTTGCGGGGTCTGCAATCATTGGTCTAAGTTCTGAACAATCAGTTCTTAGAAATTTATACGAGATGGAGCATTTGGATGATGGTCATGATGCAATATCCTTTCATGATACTTCTCAATGTAGTGAATCTTGTCAATTAAAGATTTATGGGCTGAAAACACTGGTGAAGATTTCTTTGCATTATGAGGGAAGTTATGTTAAGCGTAATATTAATGGATTGTTGGAAACTTTGTCAAGAATGCTACGAGAAAGTGATCATTTTGTTAGTAGAGCAACTAGCTCCTGTGAAAATGATAAGGCTCATATTAGATTAGCTGCTGCAAAGGCAATCCTTCGTCTTGCTAGGAAGTGGGATTTACATATTACTCCTCAGACTTTTCGGTTTTCTATATTGATTGCGAAGGACCCTTCTTTGTTTGTTAGGAGCAAATTTCTTATTAAGACCCAAAAGTTGTTGAAGGGGCATAAGCTACCAATCAGATTTGCTTGTGCTTTTGCTTTGGCGGCACCAAGTGGTATTGGTGATATGCAATATCAGTTGCATTACCTTTGTTGGATATCTAATTATAATTTTGAAAATTCAAAAGTTGATTCTAGAGTCATCTTGTCATTTGTTATGCCATACTTCCTTTGTGGGCATGCTTTCCTTGGTTCTTTGCCTTCACTTGATGTGCACTTGGATTCTTTGTTGGGCCTTTAA 2772 0.3882 MDNSSLQFVSEIGRHLAQRSRPNKDFIVKSLGVSFAFFVTFSFTNAPPAQIIQIPVISIKAANALAQIKQSPQPRTAKELQAAKKQEDALKPLANAVVCGGLLQHADKEVRLLVAMCVTELFRLMAPEPPFEDKHLRDVFKLIISSFEDLADTASPFFSKRVKVLEIMAQLKCCVIMLEIDCLDLVLQMFNIFFSIVRLSLRSTYSLSFSSFCLASLPDFWAYYLIEENLYSGMQQDEHLLISAMTSIMINILYESEEAFQQLFGVILQNLVKQKKDAILAAEKLAASVIKTCAQEDDLNLLVCGFLASCIHDRDAMGSGLKDYYYEIFSKVFQCAPQMLLSVIPTLIKELSADEVDVRIKAVNLAGKLFALEHRVAQKYHDLFVEFLKRFSDKSVDVRISALQCAKTFYLANAYDGTESREVMTASVEDRLLDSDEQITVRKSALQKLIKVYRDYCKKCYEGSMTISSHFEEIPCKIMMLCYDKDCKEFRFQNMEFVLADDLFPEDLPVEERTNHWIHMFSLFSFPHEKALDAILTQKRRFQNEMKNYLAMRKKLKEICPEEMEKKIESMFTKMAAFFPDSHKAEECLHKLNQIKDISVFKLLEKLLEEQAFTTMGQTMKDKHLAIVRYCPSMLKGLEQQFQMLLEQKSSVNDKLIEVIAKAVCNMSFNHSDIYPFLKRICLDGTRRQAKFAGSAIIGLSSEQSVLRNLYEMEHLDDGHDAISFHDTSQCSESCQLKIYGLKTLVKISLHYEGSYVKRNINGLLETLSRMLRESDHFVSRATSSCENDKAHIRLAAAKAILRLARKWDLHITPQTFRFSILIAKDPSLFVRSKFLIKTQKLLKGHKLPIRFACAFALAAPSGIGDMQYQLHYLCWISNYNFENSKVDSRVILSFVMPYFLCGHAFLGSLPSLDVHLDSLLGL 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01342 923 SUPERFAMILY ARM repeat 236 846 IPR016024 -
Spst8g01342 923 CDD PDS5 60 697 - -
Spst8g01342 923 Gene3D - 253 466 IPR011989 -
Spst8g01342 923 Coils Coil 635 655 - -
Spst8g01342 923 Coils Coil 539 559 - -
Spst8g01342 923 Pfam Sister chromatid cohesion protein PDS5 protein 725 861 - -
Spst8g01342 923 Pfam Sister chromatid cohesion protein PDS5 protein 60 439 - -
Spst8g01342 923 Pfam Sister chromatid cohesion protein PDS5 protein 626 712 - -
Spst8g01342 923 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 9 860 IPR039776 GO:0007064
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01342 Spst-Chr8 12582981 12608763 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01342 K11267 - gmx:100777822 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01342 8 12582981 12608763 Spst8g01342 8 12582981 12608763 ECH