LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g01316	ATGAGGGCCGCGGTCGAAGGATCCTTGGCCGAGAGGTTTGACGACGGCGAAAAGGAGAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACCCATCATCTTCAGCATCTGAAGTGAATGAGACCCAGGGGATGTCGCCAGATTCAGGGAAAATAGAAACACCTACTCATGCATCTGCATCCTTGGCCAGTTCATTGAAGCAGGCCAATGTGTGTTCTCCTAATGAGCAAGGATTATCCAAAGCATCAAATGTTGCTTTTACATCAATGCCCCCCATGCATATCAATGGGCAAGTGGAGCCTAGTGATTTGCGAATTGTGCCTATGTATGGTGGAGGCTTTGATTCAAAATCATTTTCTGAGCCCACTGGTTGTAGAGGGTCATCGGGAATTAATAAAAACAAGGACTCAGTCTCTTGTGGTGAAATTCTTGGTGGCCAGAAAAGTTATTTTAGTCCACATTGGTCTTTCGAGGCAGTTGAGAAGGCATTGGAGAAGGGCGATGTTTTTAATGCTCTTTTTCATGTTAATGCTCACAATCGAGTCGAGGCCTACTGCAAAATTGATGGCGTGCCAACTGATGTGCTCATTGGTGGGATACCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAAGTTGATCCCTTGCCATTGTGGACAAAAATGAAGGGACCAAATGGGTCTTGTAACAACACTGCAACACTGGAAGGTTGCAACCTTCTTACAGAAGATAATGAAGTGGGTGGTAAGGGGAAACATAAGATTGACGCAGATCATGAGTCTTCCCATTATCGAAGCCATCCTTGTCAAAACAAGGAGGATGCTGATCAAAACATCTCCTATAGAAATGATTCTTTAATTGGAAAAAGAATTGTGTGTGAAGATAATACCTCCCAGGGTTCTACTAAACATTTAGATCTACTGGGAATGGCCAACCGTGATAGCATTAATGGACATCACTATGCTACTCCTGATTCCTTAAAGAGCAATTCTTGTAGTGGACAAAGTGAAGCAGTTAATGCAGTGGAAAAGATGTGTTTGTTGATTAATTCTTTCCCTTCTAAAAGACCAACTGGCAGGGTGGTCTCTATTATTGAGAGATCGCCTCGTCGAGAGGGTCTTGTTGGTCATCTTAATGTAAAGCAGTGCGCTTCCTTCAAAGACATAACCAAAAAGGATGTTAGGAAGAATACAAACATGGTTTCTGATAATGATTACATCCAGCTGATACCAACTGATCCAAAGTTTCCTACTATGATGCTTCTTGTTAGAAAGTTACCCAAGTGCATTATGGAAAGGCTGAAAAGTGGTGATATGACAATTGAAATGGATCTGGTAGCTGCAAAAATTGATGATTGGGTTGAAGAAAATCCTTTTCCCGAGGCTCACATCTTGCATGTATTTGGACGAAGTGGTGAAATTCAGACCCAATTAGGTGCAATTTTGTTTCAGAATGGAATCTGTTTGTCTGAATTTCCTCCTGAAGCTCTTTCCTCTCTGCCATGTGTTCCTTGGGAGGTGCCACTGAAGGAAATTGAAAGTAGAATAGATCTAAGAAATTTGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGACGATGCACTTTCAATTCAGAAGTTACCTAATGAAAATTATAGAGTAGGTGTCCACATTGCTGATGTATCATATTTTGTTTTACCTGGCACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTCTATATGTTGCAAAGAAAGTTACCTATGTTGCCTGCATTATTATCTGATAATGTTTGTTCACTTAGTCCTGGAGTGGATCGACTTGCTGTTTCTATGCTCCTGGATATAAATCATGTAGGGGATGTTGTAGACCGTTGGATTGGTCGTACTGTTATACACTCATGTTGTAAGCTTTCATATGATCATGCTCAGGACATCATTGACAGGGATTTTGACTTTAAAGGTTTAAACTATACTGAAGATGTTTTTCCCAGAGTGTATGGCAGTTTTGAATGGCCTGATATTATTATTTCTCTGAAGAGTCTGTATGAAATTTCAAATGTCTTGAAACACAAGAGGTTTACTGATGGGGCTCTAAGGCTTGAAAACCCCAAAGTTGTTATCTTGTTTGATGAAGATGGAGTTCCTTATGATATTATCCTTTCAGAAAGCAAAGAATCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATAGAGTTGCTGCTGAAGTCATAAGTAGAGCTTATCCTGATGCTGCATTGTTGCGTAGGCATCCTGAACCTAATGTGCGGAAGCTGAGAGAGTTAATGGCATTTTGTCAGAAGCATGGTTTAGAATTGAACACGTCTTCATCTGGTCAATTCCACTGGTCACTAGAGCAGATCCGGGAAAAGCTCAAGAGTGATCCTGTGCTTTACTATATACTTATTTCTTATGCTACAAAGCCAATGCAGTTGGCCTCTTACTTCTGCAGTGGAGATTTAAAGGACAGTGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTCACATCACCCCTGCGCCGGTATCCAGATATTATTGTTCACCGGACACTTCTTGCTACTATTGAGGCTGAGGATTTGTATATGAAGCATCAAAAGGCTTTGCAGGTTTACAAGGAAATGGATGTGCAAAAAAGATGTTTCACAGGTATAAATTTTGATAAAAATGCTGCAGAATCCATCAAAGGTAGGGAAGCACTATCAGCTGCAGCTGTGAAGTATAGAGTTCCACGTGCTGAAATACTTGCAAACATCGCTGCTTACTGCAATGAGAGAAAGCTAGCTAGTAGAAACGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTGAAGAAAAAGGAGGTCTTGTTGTCAGAAGCAAGAATTCTGGGACTCGGCCCAAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTTGAAGGTTTGACTGCAGAATGGCTTGAAACAACATCCACATTGGTTCTTAGCATGTCTACTAATAGGTGTACATTTAGGAGGGGCTTGCCTAACAAGTGGAGGCGGTTTGAAGATGTTGCGCTGCTCACATGTCCATATAACCTGAAATTTACCACGGTTAATTCTAACCAAAGTGATGCAATAAAAGTGGATGATAGTATATCTGCCATGGACAAGGAGCCCATTTCAATATCAGACACGTTGGAAAGTAAAATTGACCCTTTAGTTTTTCCGCTCACAGTGCATGTTCTTTCAACAATTCCAGTAGCTCTTCATGCTATTGGAGGTGATGATGGACCCCTTGATATTGGAGTGAGGTTGTACATGAGCTCCTATTTTGGGTGA	3384	0.4102	MRAAVEGSLAERFDDGEKEKKKKRRSNRRSKQNPSSSASEVNETQGMSPDSGKIETPTHASASLASSLKQANVCSPNEQGLSKASNVAFTSMPPMHINGQVEPSDLRIVPMYGGGFDSKSFSEPTGCRGSSGINKNKDSVSCGEILGGQKSYFSPHWSFEAVEKALEKGDVFNALFHVNAHNRVEAYCKIDGVPTDVLIGGIPAQNRAVEGDIVAVKVDPLPLWTKMKGPNGSCNNTATLEGCNLLTEDNEVGGKGKHKIDADHESSHYRSHPCQNKEDADQNISYRNDSLIGKRIVCEDNTSQGSTKHLDLLGMANRDSINGHHYATPDSLKSNSCSGQSEAVNAVEKMCLLINSFPSKRPTGRVVSIIERSPRREGLVGHLNVKQCASFKDITKKDVRKNTNMVSDNDYIQLIPTDPKFPTMMLLVRKLPKCIMERLKSGDMTIEMDLVAAKIDDWVEENPFPEAHILHVFGRSGEIQTQLGAILFQNGICLSEFPPEALSSLPCVPWEVPLKEIESRIDLRNLCIFTIDPSTATDLDDALSIQKLPNENYRVGVHIADVSYFVLPGTALDSEAQSRSTSVYMLQRKLPMLPALLSDNVCSLSPGVDRLAVSMLLDINHVGDVVDRWIGRTVIHSCCKLSYDHAQDIIDRDFDFKGLNYTEDVFPRVYGSFEWPDIIISLKSLYEISNVLKHKRFTDGALRLENPKVVILFDEDGVPYDIILSESKESNFLVEEYMLLANRVAAEVISRAYPDAALLRRHPEPNVRKLRELMAFCQKHGLELNTSSSGQFHWSLEQIREKLKSDPVLYYILISYATKPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYMKHQKALQVYKEMDVQKRCFTGINFDKNAAESIKGREALSAAAVKYRVPRAEILANIAAYCNERKLASRNVKDACDKLYIWFLLKKKEVLLSEARILGLGPRFMSIYIQKLAIERRIYYDDVEGLTAEWLETTSTLVLSMSTNRCTFRRGLPNKWRRFEDVALLTCPYNLKFTTVNSNQSDAIKVDDSISAMDKEPISISDTLESKIDPLVFPLTVHVLSTIPVALHAIGGDDGPLDIGVRLYMSSYFG	1127

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g01316	1127	PANTHER	RIBONUCLEASE	21	1124	-	-
	Spst8g01316	1127	Gene3D	-	394	478	-	-
	Spst8g01316	1127	FunFam	DIS3-like exonuclease 2	145	245	-	-
	Spst8g01316	1127	MobiDBLite	consensus disorder prediction	1	64	-	-
	Spst8g01316	1127	MobiDBLite	consensus disorder prediction	255	277	-	-
	Spst8g01316	1127	SUPERFAMILY	Nucleic acid-binding proteins	150	372	IPR012340	-
	Spst8g01316	1127	SUPERFAMILY	Nucleic acid-binding proteins	481	964	IPR012340	-
	Spst8g01316	1127	SMART	RNB_2	520	874	IPR001900	GO:0003723\|GO:0004540
	Spst8g01316	1127	Pfam	Dis3-like cold-shock domain 2 (CSD2)	411	491	IPR041505	-
	Spst8g01316	1127	SUPERFAMILY	Nucleic acid-binding proteins	363	492	IPR012340	-
	Spst8g01316	1127	Gene3D	-	146	239	-	-
	Spst8g01316	1127	Hamap	DIS3-like exonuclease 2 [DIS3L2].	21	1102	IPR028591	GO:0000175\|GO:0034427
	Spst8g01316	1127	MobiDBLite	consensus disorder prediction	7	21	-	-
	Spst8g01316	1127	ProSitePatterns	Ribonuclease II family signature.	841	865	IPR022966	-
	Spst8g01316	1127	Pfam	RNB domain	520	872	IPR001900	GO:0003723\|GO:0004540
	Spst8g01316	1127	MobiDBLite	consensus disorder prediction	31	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g01316	Spst-Chr8	12305429	12310955	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g01316	K18758		-	gmx:100817387	1861.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g01316	8	12305429	12310955	Spst8g01316	8	12305429	12310955	ECH