Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01273 ATGCTTTATCTGCTCTCATCGTGTGTGTGTATACCACGTGCAATTTCGGTTCAACCAAGCACAGATCACAGCAGTTCCAAGTCTGACAGAGCGCAGAGAATTGAGTATCTCACAAAAATCCCTCGGAGTGTCAACTTGGAGAGCCTGCAGAATGGGTATTTGTTTCCTGAGATATCCATGCGAGAGTCTGATTATGCTCAAAGGAATCCACATGCAAGATTGATAAGACTTGGAATTGGTGATACTACACAGCCAATACCAGACATTATAACTTCAGCTATGGCGGAGCAAGCAATGGCTCTGTCAACAGCACAAGGCTATAAGGGTTATGGGCCTGAGCAAGGCTACAGGGAGCTAAAAAGGGCAATAGCAAAAACCTTTTACCAAGATATGCAAGTGAAAGAAAATGAGATTTTTGTATCTGATGGTGCCCAGTGTGATATTTCTCGCGTTCAGATGCTTCTGGACGCTAGTTTGTCAATAGCTGTGCAGGATCCAACTTTTCCGGGTTACGTAGATTCCAGCGTGATTGTTGGTAGGGCTGGAAGGTTGAATGCAGGGAGTGGAAAGTACAAAAAGATTGTGTACATGAAGTGTGGACCAGAGAATAATTTCTTTCCAAACCTATCAACAACTCCAAAGACTGACTTGATTTTCTTTTGTTCTCCAAACAATCCAACTGGTAGTGCTGCGTCTCGGCAGCAACTTGAGCAACTTGTGGAGTTTGCAAAAGCAAATGGGTCTATCATCATTTATGACTCTGCTTATGCTGCTTACATTTCAGATGAAAGCCCTAGATCAATTTTTGAAATTTCTGGAGCCAAAGAGGTGGCAATTGAAATTTCATCATTTTCCAAATTTGCTGGGTTTACTGGTGTCCGGCTGGGGTGGACAGTAGTGCCAGAAGAGTTGTTGTATGCCAATGGTTATCCTATGATAAGGGATTATGATCGCATTGTCTGCACCTGCTTCAATGGTGCATCTAATATTGTTCAAGCTGGTGGACTTGCATGCCTTTCTCCACAAGGATTTCAGGCATTGAAAACAATAATGCAGTATTACATGGAAAATGCAAAGATACTTGTTGAGACGTTTGAGTCAATGGGCCTAAAAGTGTATGGGGGCAAAAATGGGCCTTATATATGGGTGCATTTTCCAGGGTTGAGTTCATGGCAAGTCTTCAACCAGATTCTTGAGAGAGCAGCCATTGTCACTGTCCCTGGAATAGGGTTTGGTCCTGGGGGCGAGGGCTATATTAGAGTTAGTGCCTTTGGTCGCAGAGAATCTGTGTTGGAAGCTTCGAAGAGATTGACAAAACTACTATAA 1326 0.4321 MLYLLSSCVCIPRAISVQPSTDHSSSKSDRAQRIEYLTKIPRSVNLESLQNGYLFPEISMRESDYAQRNPHARLIRLGIGDTTQPIPDIITSAMAEQAMALSTAQGYKGYGPEQGYRELKRAIAKTFYQDMQVKENEIFVSDGAQCDISRVQMLLDASLSIAVQDPTFPGYVDSSVIVGRAGRLNAGSGKYKKIVYMKCGPENNFFPNLSTTPKTDLIFFCSPNNPTGSAASRQQLEQLVEFAKANGSIIIYDSAYAAYISDESPRSIFEISGAKEVAIEISSFSKFAGFTGVRLGWTVVPEELLYANGYPMIRDYDRIVCTCFNGASNIVQAGGLACLSPQGFQALKTIMQYYMENAKILVETFESMGLKVYGGKNGPYIWVHFPGLSSWQVFNQILERAAIVTVPGIGFGPGGEGYIRVSAFGRRESVLEASKRLTKLL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01273 441 FunFam LL-diaminopimelate aminotransferase, chloroplastic 84 340 - -
Spst8g01273 441 Pfam Aminotransferase class I and II 74 430 IPR004839 GO:0009058|GO:0030170
Spst8g01273 441 NCBIfam LL-diaminopimelate aminotransferase 43 439 IPR019942 GO:0008483
Spst8g01273 441 Gene3D Aspartate Aminotransferase, domain 1 54 437 IPR015422 GO:0003824
Spst8g01273 441 Hamap LL-diaminopimelate aminotransferase [dapL]. 41 440 IPR019942 GO:0008483
Spst8g01273 441 Gene3D - 84 341 IPR015421 GO:0003824
Spst8g01273 441 CDD AAT_like 75 437 - -
Spst8g01273 441 SUPERFAMILY PLP-dependent transferases 53 437 IPR015424 -
Spst8g01273 441 PANTHER AMINOTRANSFERASE 27 440 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01273 Spst-Chr8 11842681 11845861 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01273 K10206 - qsa:O6P43_019686 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01273 8 11842681 11845861 Spst8g01273 8 11842681 11845861 ECH