Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01178 ATGGAGAATCCCAATGCTAAAGCTCAGAGACACAGACAGCTGAGATCAAACAACATCGACCCAATCAAACAAATGAGAGAGAACCATCCTTCCACAAACTCCGAGGACGACCAGCGATCCTCCCTGCTGGATCTGGCGCGCGCCGAAATCACGGAATCATCCAACTCCAAGACCCGAACTTACGGGGGGTTTCCGGATCCGGGTTCCGGGTCGGGCCCGTCGGAGCCACAGGCACCGTTCCCGGACCAGGTCCTGGAGAACGTGCTGGAGAACGTGCTCCACTTCCTTTCCTCGCGACGCGACCGCAACGCCGCCTCATTGGTGTGCCGCTCCTGGTACCGTGCGGAGGCCCTCACCCGATCCGAACTCTTCATCGGGAACTGCTACGCGCTCTCCCCCACCCGCGCCACCACGCGTTTCACGCGCATCAAGTCCGTCACCGTCAAGGGCAAGCCGCGCTTCGCGGACTTCGATCTGATGCCGCCCGATTGGGGGGCCCACTTCACGCCTTGGGCCTCCGCCTTGGCCCAGGCCTACCCCTGGCTCGAGAAGCTCCATCTCAAACGCATGATCGTCACCGACGCCGACCTCACCCTCCTCGCCGACTCTTTCCCCGACTTCCGCGAACTCGTTCTAGTCTGCTGCGACGGCTTCGGCACTCCCGGTCTTGGCGCCGTCGCTGCTAAGTGCAGGTACAGATCTCACCTTTACTCCTCCAATAAACTTTTACTGCTTAGAGTGCTTGAGCTTGTGGAATCTGTGGTGGAGGCTGTGGGCGATGAGGAAGTGGATTGGATTTCGTGTTTTCCCGACAGCCAGACCAACATGGAGTCTCTTGTGTTTGATTGTATTGAGTGTCCTATTAATTTTGAGGCTTTGGACAGTTTAGTGGCTAGGTCGCCTCGTTTGAAGAAGCTTCGTTTGAACCAATTTGTTTCCATGGCTCAGCTCCATCGTTTACTGCTTCGAGCCCCGCAGCTTACTCACCTTGGAACAGGCTCCTTCAGTGCTAATGATCCCGGGGGCGTCGGTGAGCTGGTGCAGGATTACACGACGGCGTTTGAGGCCTGTAGATCCTTGGTTTGCCTGTCTGGATTCAGGGAGATTTGGGCCGATTACCTTCCGACGATTTATCCGGTCTGTGCGAATCTGACCTCGTTGAATTTGAGCTATGCTGATGTTAATGCTCATCAGCTGAAGCCGGTCATTCGCCACTGTCATAAGCTGCAGATATTCTGGGTACTTGATTCTATATGTGATGAAGGACTTCAGGCAGTGGCTGCTACTTGCAAGGACTTGCGTGAGCTTCGGGTTTTTCCTGTGGATGCAAGGGAGGGGACTGAAGGGCCTGTCTCTGAGGTGGGGTTTGAAGCCATTTCACAAGGTTGTAGGAAGTTGGAATCGATTTTGTATTTCTGCCAGAGGATGACTAATGCGGCTGTGGTGGCTATGTCAAAGAACTGCCCAGATCTTGTGGTGTTTCGTTTGTGTATTATTGGGCGGTACAGACCAGATCCTGTGACGCAGGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTAGGCTAGCTGTGTCTGGTTTGCTGACTGATCGTGCTTTTGAGTACATTGGGAGGTATGGGAAATTGGTTAGGACACTGTCGGTTGCCTTTGCTGGGGACACTGACATGGGCCTTAAGTATGTGCTTGAAGGATGCCCTAATTTGCAAAAGCTTGAAATTAGGGATAGTCCTTTTGGGGATGGAGCTCTGCGATCCGGTTTGCATCATTACTATAACATGAGATTCCTCTGGATGTCGACCTGTAAGTTGACGCGCCAAGCTTGCCAAGAGGTTGCACAAGCATTGCCCAACCTGGTTTTGGAAGTCATCAACAACAGTGAGGAGAATGCAGGTGATGATATTGAGGTATTGTACATGTATCGGTCTCTTGATGGGCCACGGGATGATGCCCCAATATTTGTTAACATCCTGCATTAG 1998 0.5295 MENPNAKAQRHRQLRSNNIDPIKQMRENHPSTNSEDDQRSSLLDLARAEITESSNSKTRTYGGFPDPGSGSGPSEPQAPFPDQVLENVLENVLHFLSSRRDRNAASLVCRSWYRAEALTRSELFIGNCYALSPTRATTRFTRIKSVTVKGKPRFADFDLMPPDWGAHFTPWASALAQAYPWLEKLHLKRMIVTDADLTLLADSFPDFRELVLVCCDGFGTPGLGAVAAKCRYRSHLYSSNKLLLLRVLELVESVVEAVGDEEVDWISCFPDSQTNMESLVFDCIECPINFEALDSLVARSPRLKKLRLNQFVSMAQLHRLLLRAPQLTHLGTGSFSANDPGGVGELVQDYTTAFEACRSLVCLSGFREIWADYLPTIYPVCANLTSLNLSYADVNAHQLKPVIRHCHKLQIFWVLDSICDEGLQAVAATCKDLRELRVFPVDAREGTEGPVSEVGFEAISQGCRKLESILYFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDPVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGRYGKLVRTLSVAFAGDTDMGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSTCKLTRQACQEVAQALPNLVLEVINNSEENAGDDIEVLYMYRSLDGPRDDAPIFVNILH 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01178 665 SMART LRR_CC_2 523 546 IPR006553 -
Spst8g01178 665 SMART LRR_CC_2 572 596 IPR006553 -
Spst8g01178 665 SMART LRR_CC_2 463 487 IPR006553 -
Spst8g01178 665 SMART LRR_CC_2 179 203 IPR006553 -
Spst8g01178 665 MobiDBLite consensus disorder prediction 47 62 - -
Spst8g01178 665 Pfam F-box 82 121 IPR041567 -
Spst8g01178 665 MobiDBLite consensus disorder prediction 1 17 - -
Spst8g01178 665 MobiDBLite consensus disorder prediction 1 81 - -
Spst8g01178 665 Gene3D - 76 120 - -
Spst8g01178 665 SUPERFAMILY RNI-like 107 626 - -
Spst8g01178 665 CDD F-box_AtTIR1-like 82 120 - -
Spst8g01178 665 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 161 619 - -
Spst8g01178 665 FunFam Transport inhibitor response 1 121 664 - -
Spst8g01178 665 SUPERFAMILY F-box domain 80 115 IPR036047 GO:0005515
Spst8g01178 665 FunFam Transport inhibitor response 1-like protein 75 120 - -
Spst8g01178 665 Gene3D Ribonuclease Inhibitor 122 664 IPR032675 -
Spst8g01178 665 Pfam Transport inhibitor response 1 protein domain 142 187 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01178 Spst-Chr8 10782477 10784976 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01178 - - gmx:100807836 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01178 8 10782477 10784976 Spst8g01178 8 10782477 10784976 ECH