Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01148 ATGCGTGTCACCATCGATCTAGGGTTTTGGAGCCTGGTCCTCGTCGCGGTGGTCTGTGTCGTCTTGCCGGCGATCGGCTTCTTGATCCGTCGCCGCTGGCGGCGCGCGGAGGCCAGGGCTGAGGAGATCAAGCGGCTCCTTGTTCTCGCCGAGGAGGAGTCCGTTAGAGCGGAGACTGAGGCTTCGTATTACCAACACAGCGTGGTTTCGGTCCCAAAGAACAAAATATGTGCCGTGTGTTTCTGTCCCACCACTACACGGTGTGCGAGGTGCAAAGCGGTTCACTACTGTGGGTTCTGTGTTGGGCATGTGGCCTATGAGATGCTAAGTTTGCTTGTTATTGCCTGTGAAAATAAAGAATCGTCTAAGTTTTGGTATTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGCCGAGGTCACAAAGATGAATGCCATCCTCCCATCCCAACTTTCCAGACTGATGATTTGGTAAGTGATATTGGAAAGAAGGTAGCAGAGCCAGACTACCATGGGATCCCTGAACAGAGTCCTCAGACTGAAAGCACGGAGTATGTAACATCATCTGATAGAAGCTGTTCTGATATTTCACGTGCAAAGGATTATAGTGCACAAGTTGAGTCTCTTCAAGAGGGAAATCTTACAGGCTCTAATTCTGAATTATCTAGTAATTCATTCTCTGGATTCTCAGCTTCCACGGGTGCTAGTGAATCATCTGATTATTCTTCTGTTTGTGAGAGTATCATCTCAAATGAGCATGAGAGATCCGGGGAACATATTTTTGTAGACCGCACCCATGACATATCTGATACCACTTCAAGTCATAACAGCATTGGTGAATCCATTCCATTATCACCTAAGTTTGTTAGTTTGGTTGATTCAGTAGATGGTTATCCAGCAATGCAAGTTAGACATGGTCACGGAAAAGAAGAGAGTAAACTCACATCAGATAGTCGTTCTGGTTTACGGATGCGGAAAGGGACAACAATTGAGCCTTCTAAAGTGTCTTCTGAATTCTGGAATAAAACACTTGATTCAATGAGGATAAAAGATGACACTAATAGCAACCCTCTTCCATCCCAGAGTGATTCTCCTCCAAAGTCAGTTGAGAACAACATGCCACATGTAGGATCAGAATCTTCAGAGAAAAATGTTGTAGATTCTTCAGATTGTGCTGATGCTGTGAGCATACATAATTTGCAAACAGTTGGTTCTAAGGTATCAAATCATGTTATCAACCCTAGTAGCACCTTGGAATCAGCTGAAAGTAGAGGTCTGCCACGTGCCTTTGCTGATACTAAGTTAGTTTCTAGAACTAGAACTGAAGAGCATTCACATTATAGGACAAAATGTGGAAATAATGGCATCCAATCTGGCACTGTTACTTCATCTCAGGTTGTTAGCTCTCCAAATTCTGACCTGAAAACATATGTTCTGAAAAATTCTGATCAGTATGGAGGATCAAAGTTGTCTAAACCCTTTCCATTAGCTGGTGGGAGTGATATTACTGGAAAATACAGTGACAAGGGTCACTTTCCATATGATTTTTTTGTCAAGCTTTTTAACTGGAACAGGGTGGAGTTGCAACCATTTGGTCTTACAAACTGTGGAAACAGCTGTTATGCTAATGCTGTTCTCCAGTGCTTGGCTTTTACACCACCCCTGACTGCTTATTTACTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTTCCATCTCACCTGTGGGCATACTCTCTCAACTACAGAATGTTGGGAGCCAACTTGGTAATGGAAGAGAAGAAGATGCACACGAGTTTCTAAGGCTTGCTGTTGAGACAATGCAATCCGTTTGCCTTATGGATTCTGGGGATAACACATCAGACCCATTAAAAGAGGAAACCAATTTAATGGGCCTAACTTTTGGAGGTTATCTTCAATCAAAGATAAAATGCATTAAATGTGGAGCGAAGTCTGAGCGTCAAGAAAGGATGATGGATCTTACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGACAGTTTACAATCGTTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGGTGTAAGTCTTACGAGAAGGCCAAGAAGAAAATGACAATTTTGGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTCAGTCAGGAAAATTTGGGAAGCTCAATAAACCTATCCAGTTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGGACTAGTGATTTGGCTATATACAGGCTATATGGGGTAGTTGTTCACCTGGATATAATGAATGCTACTTTTTCGGGTCACTATGTATGTTATGTGAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGATAGTGTGTGTGCCGGCCTGAACAGGGCCCCAATGAATGATAGGAGGCCAGGGAGCCAGCCTAAACTGAGTCCTGAACGAAAGCTTCCCAAACAAATTTGTTTTGTGACACCTGTTGAATTACAAAGCGTCTTGGCAAAAGGAGCATACATGCTTTTTTATGCAAGGTCCGCTTCTTCTTATGGATTTATTTTGTGCTCACCTAGGGCCCCAAGGTTAATCAGAAACAGTATAGTATCTTCAGATTCAAAATGGAAACGCAATGGAAAAACTGTCATAAAGAGAAGACTATCTACAGTTTCTGGTGCTGGAGTTAATTTGACTTCTGCAGATGGTTCATCCTCCTTAGATGCTATCTATTCAAAGTTTCTCCACCAGAGAAGGATTTTGGAAGAAGATTCATCAAGTGATAATTCATCCCTGATTAGCAGCACTTCTGATGAAGGTTCTTGCAGTACAGACAGCACGAGTGATTCAACCAGTACCGAGGACTTTGCTGATTATATTTTTGGTGATTTGGGACGCGGTTCAGGTGGCATGTTGAGAAATTCAGATTCCAACATTTCCCCTGCATTGTCATCTTCTCCCCACTCTAGATATTTTTCCTCTTCTGATATAGACCCACATGATTCAGTTTTGCTACATTCAACTGGGTTCCAACCACCTGCCCGGGTTCAAAGGTGGAGATAG 3117 0.4264 MRVTIDLGFWSLVLVAVVCVVLPAIGFLIRRRWRRAEARAEEIKRLLVLAEEESVRAETEASYYQHSVVSVPKNKICAVCFCPTTTRCARCKAVHYCGFCVGHVAYEMLSLLVIACENKESSKFWYCSGKCQIVHWRRGHKDECHPPIPTFQTDDLVSDIGKKVAEPDYHGIPEQSPQTESTEYVTSSDRSCSDISRAKDYSAQVESLQEGNLTGSNSELSSNSFSGFSASTGASESSDYSSVCESIISNEHERSGEHIFVDRTHDISDTTSSHNSIGESIPLSPKFVSLVDSVDGYPAMQVRHGHGKEESKLTSDSRSGLRMRKGTTIEPSKVSSEFWNKTLDSMRIKDDTNSNPLPSQSDSPPKSVENNMPHVGSESSEKNVVDSSDCADAVSIHNLQTVGSKVSNHVINPSSTLESAESRGLPRAFADTKLVSRTRTEEHSHYRTKCGNNGIQSGTVTSSQVVSSPNSDLKTYVLKNSDQYGGSKLSKPFPLAGGSDITGKYSDKGHFPYDFFVKLFNWNRVELQPFGLTNCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTKSSISPVGILSQLQNVGSQLGNGREEDAHEFLRLAVETMQSVCLMDSGDNTSDPLKEETNLMGLTFGGYLQSKIKCIKCGAKSERQERMMDLTVEIDGEIATLEDALRQFTIVETLDGENKYHCVRCKSYEKAKKKMTILEAPNVLTIALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDLAIYRLYGVVVHLDIMNATFSGHYVCYVKNFQSRWFKVDDSVCAGLNRAPMNDRRPGSQPKLSPERKLPKQICFVTPVELQSVLAKGAYMLFYARSASSYGFILCSPRAPRLIRNSIVSSDSKWKRNGKTVIKRRLSTVSGAGVNLTSADGSSSLDAIYSKFLHQRRILEEDSSSDNSSLISSTSDEGSCSTDSTSDSTSTEDFADYIFGDLGRGSGGMLRNSDSNISPALSSSPHSRYFSSSDIDPHDSVLLHSTGFQPPARVQRWR 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01148 1038 MobiDBLite consensus disorder prediction 990 1011 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 349 386 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 301 333 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 174 191 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 436 467 - -
Spst8g01148 1038 FunFam Ubiquitin carboxyl-terminal hydrolase 15 524 821 - -
Spst8g01148 1038 Pfam Ubiquitin carboxyl-terminal hydrolase 530 863 IPR001394 GO:0004843|GO:0016579
Spst8g01148 1038 Gene3D Cysteine proteinases 523 871 - -
Spst8g01148 1038 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 530 866 IPR028889 -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 168 191 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 346 388 - -
Spst8g01148 1038 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 254 867 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 944 970 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 302 319 - -
Spst8g01148 1038 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 531 546 IPR018200 GO:0004843|GO:0006511
Spst8g01148 1038 SUPERFAMILY HIT/MYND zinc finger-like 124 146 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 990 1013 - -
Spst8g01148 1038 Coils Coil 33 60 - -
Spst8g01148 1038 MobiDBLite consensus disorder prediction 449 467 - -
Spst8g01148 1038 ProSiteProfiles Zinc finger MYND-type profile. 97 144 IPR002893 -
Spst8g01148 1038 SUPERFAMILY Cysteine proteinases 529 865 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01148 Spst-Chr8 10197418 10205196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01148 511 865 Miscellaneous Gene Families AT4G31670 47.059 3.22e-112 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01148 K11855 - gmx:100782303 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01148 8 10197418 10205196 Spst8g01148 8 10197418 10205196 ECH