Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00986 ATGGCGCAGGTGCTGTACATGGCTTTACCTTTCCCCGCAAAACCCCACAAAGCTGCATCATCACCCTCTTCTTCTTCCAGGCCATTGAAGCTTGCCCGTAGAACCCGTAGCACCAACGTATCCATTGCCACCACTGCCAAAGGCAGTGGCAACCGTCTGCTCAAAACCCAGAAACTGAATTTAGAGGTTTCTCCTCATAGAGCTGTTTCAGCGGTGAGATTGATGCGAATTGAGCTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAATGAGATGGGATATGTTCAAAGAACGCTTGGTTTTCGCACTCGGGAATTGAATCATCATGATCTTAGATTGGTCACAGACATTGTTGGGGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAGTTCACTATGTCACGATAAAGATATATCTAGCATGGAACCCCTTCTCTTGCAGATTCTACGAATAGGCTTCTATGAGATTGTCAAATTAGACATGCCACCTTATGCTGTAGTAGATGAGAATGTTGAGCTTGCTAAAGTTGCTCTCAGACCTGGGGCTGGCAACTTGGTCAATGGAATTCTCCGAAAGCTAGTTGTGCTTAAGGAGAATGATACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTGTACTCACATCCAGTTTGGATGATAAGGAGATGGATAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGAATAACACAAACCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTGATACAGCTTAATGCATTGAAGGTGCTACCACTTCCAGGATTGAATGTCCCACACAAGCTTTCATTGCATTTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTATCATCCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATACTTGATGGTTGTGCTGCTCCTGGTGGAAAGACCCTCTATATGGCCTCTCATTTAAGTGGCCAAGGTAAGGTATTTGCTGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGCACATTGACTGATAGCGGACAACTTAAGAGTGACAAAGTTCTGTTGGACGCCCCATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTAGAGGATATGGAAGAACTGAAGAAATTACAAGATGAGCTCCTGGATGCAGCATGCAAATTGGTAAAACCTGGGGGAGTACTAGTTTACAGTACATGCTCCATAGATCCTGAAGAAAATGATGACAGGGTGACTGCATTTCTTGTACGACATCCGGATTTCCGTATTGATCCTGTAGACAGATATGTTCCTCTTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCTCTAGATGGCTCCTTTGCAGCTCGTTTAGTACGGGATTCATAG 1596 0.4449 MAQVLYMALPFPAKPHKAASSPSSSSRPLKLARRTRSTNVSIATTAKGSGNRLLKTQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVELAKVALRPGAGNLVNGILRKLVVLKENDTLPLPKVEGDDRAQARALATLYSHPVWMIRRWIKYLGQEEAIKLMIWNNTNRASGFSRDDLVIQLNALKVLPLPGLNVPHKLSLHLDEFVRIKTGLQIIIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETILDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDSGQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAACKLVKPGGVLVYSTCSIDPEENDDRVTAFLVRHPDFRIDPVDRYVPLDFVTSSGFFFSNPVKHSLDGSFAARLVRDS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00986 531 Gene3D Vaccinia Virus protein VP39 230 529 IPR029063 -
Spst8g00986 531 MobiDBLite consensus disorder prediction 18 37 - -
Spst8g00986 531 FunFam Ribosomal RNA small subunit methyltransferase B 64 213 - -
Spst8g00986 531 Pfam NusB family 98 204 IPR006027 GO:0003723|GO:0006355
Spst8g00986 531 PRINTS Viridiplantae FMU-related RCMT signature 488 500 IPR023268 -
Spst8g00986 531 PRINTS Viridiplantae FMU-related RCMT signature 72 95 IPR023268 -
Spst8g00986 531 PRINTS Viridiplantae FMU-related RCMT signature 211 224 IPR023268 -
Spst8g00986 531 PRINTS Viridiplantae FMU-related RCMT signature 96 112 IPR023268 -
Spst8g00986 531 CDD AdoMet_MTases 341 467 - -
Spst8g00986 531 SUPERFAMILY NusB-like 103 238 IPR035926 -
Spst8g00986 531 PRINTS RNA (C5-cytosine) methyltransferase signature 512 529 IPR023267 GO:0001510
Spst8g00986 531 PRINTS RNA (C5-cytosine) methyltransferase signature 411 423 IPR023267 GO:0001510
Spst8g00986 531 PRINTS RNA (C5-cytosine) methyltransferase signature 461 477 IPR023267 GO:0001510
Spst8g00986 531 PRINTS RNA (C5-cytosine) methyltransferase signature 343 353 IPR023267 GO:0001510
Spst8g00986 531 PRINTS RNA (C5-cytosine) methyltransferase signature 314 328 IPR023267 GO:0001510
Spst8g00986 531 Pfam 16S rRNA methyltransferase RsmB/F 333 527 IPR001678 GO:0008168
Spst8g00986 531 Gene3D - 83 229 IPR035926 -
Spst8g00986 531 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 246 530 IPR001678 GO:0008168
Spst8g00986 531 MobiDBLite consensus disorder prediction 14 37 - -
Spst8g00986 531 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 194 529 IPR023267 GO:0001510
Spst8g00986 531 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 226 529 IPR029063 -
Spst8g00986 531 FunFam Ribosomal RNA small subunit methyltransferase B 326 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00986 Spst-Chr8 8563701 8569949 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00986 K03500 - gmx:100779327 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00986 8 8563701 8569949 Spst8g00986 8 8563701 8569949 ECH