Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00975 ATGGCGCCTGTGGCAGCGAGAAGCGCAGCCGCCGTTGGCTTTGGCGCTGCAATCTTGATTTCAGTCGCTCTCACCACATATTTCATCTGTGACCGCCGCTCCATGAAGAAGAAAAAGAAGAAATCAAGGAAGAATGGACTCGTGGAGGCCATCGGTAACACCCCGCTAATTCGGATCAACAGCCTCTCCGCCGCCACTGGTTGTCAAATTCTCGGCAAGTGCGAGTTCTTGAATCCTGGAGGGAGCGTCAAAGACCGTGTTGCTCTTCAAATCATTCAAGAGGCTCTGGAATCTGGCCAGCTACGTCCAGGTGGAATAGTCACTGAAGGGAGTGCTGGAAGCACTGCCATTAGCATTGCAACTGTTGCTCCTGCCTATGGGTGCAAAACCCACGTGGTTATACCCGATGATGCTGCCATTGAGAAGTCTCAAATACTTGAAGCACTAGGGGCAACTGTTGAAAGAGTGCGACCAGTGTCCATTACTCACAAAGACCATTTTGTTAATATCGCAAGAAGACGGGCATCTGAAGCAAATGAGTTTGCGCTTAAGCATAGAAATTCACAACTAAATGGAAAGGAGGACACTGAGAAAATAAATGGTTATGAATCTGATGGATACAATTATAGCTCTCTGTTTCCTTGTGACTGTCAAGGTGGGTTTTTTGCTGATCAGTTTGAGAACTTAGCGAACTTCAGGGCCCATTACAAGGGTACGGGGCCTGAAATTTGGGAACAGACAAATGGAAAGTTAGATGCATTTGTTGCAGCAGCAGGCACTGGTGGCACTGTGGCTGGTGTTTCTACGTTTCTTCAGGAAAAGAATCCAAACATCAAATGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAAGGTAACACGGGGAGTGATGTACACCAGAGAGGAGGCCGAAGGAAGAAGACTTAGGAATCCATTTGACACCATAACAGAAGGAATTGGAATTAACAGGATAACGAAGAATTTTGCGATGGCAAAACTTGATGGCGCCTTTAGAGGCACCGATAGGGAGGCTGTTGAAATGGCTAGGTTTCTTTTGAAGAATGATGGACTCTTCCTTGGGAGTTCTTCTGCAATGAACTGTGTCGGAGCGGTAAGAGTAGCACAGGCAATTGGCCCTGGTCACACCATTGTAACAATACTCTGCGATAGTGGAATGAGACATTTGAGTAAGTTCTATAATGCTGACTACTTGTCTGAGCTGGGTTTGACTCCGAAAGCAGATGGATTGGAGTTCTTAGACATCCAATGA 1275 0.4659 MAPVAARSAAAVGFGAAILISVALTTYFICDRRSMKKKKKKSRKNGLVEAIGNTPLIRINSLSAATGCQILGKCEFLNPGGSVKDRVALQIIQEALESGQLRPGGIVTEGSAGSTAISIATVAPAYGCKTHVVIPDDAAIEKSQILEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKHRNSQLNGKEDTEKINGYESDGYNYSSLFPCDCQGGFFADQFENLANFRAHYKGTGPEIWEQTNGKLDAFVAAAGTGGTVAGVSTFLQEKNPNIKCFLVDPPGSGLFNKVTRGVMYTREEAEGRRLRNPFDTITEGIGINRITKNFAMAKLDGAFRGTDREAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQAIGPGHTIVTILCDSGMRHLSKFYNADYLSELGLTPKADGLEFLDIQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00975 424 CDD CBS_like 52 398 - -
Spst8g00975 424 PANTHER CYSTATHIONINE BETA-SYNTHASE 46 405 - -
Spst8g00975 424 FunFam Cysteine synthase, putative 51 80 - -
Spst8g00975 424 Gene3D - 233 397 IPR036052 -
Spst8g00975 424 Gene3D - 51 80 IPR036052 -
Spst8g00975 424 Gene3D - 81 183 IPR036052 -
Spst8g00975 424 Gene3D - 218 232 IPR036052 -
Spst8g00975 424 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 43 405 IPR036052 -
Spst8g00975 424 Pfam Pyridoxal-phosphate dependent enzyme 50 391 IPR001926 -
Spst8g00975 424 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 73 91 IPR001216 GO:0006535
Spst8g00975 424 FunFam Cysteine synthase 233 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00975 Spst-Chr8 8532070 8534424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00975 42 398 Miscellaneous Gene Families AT3G04940 29.248 5.10e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00975 K01738 - gmx:100799081 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00975 8 8532070 8534424 Spst8g00975 8 8532070 8534424 ECH