Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00910 ATGTTCGTCCGCAATGTTTTGTCCCGCGCGTCCACCGCCACTTCCCGGACCTCTTCTTTTTCTGCTTCACATAGGCCCCAACACTTCTCCAACCACTTACATTCCCTCATTCCCCAATCCCCCAACAAGGTTTTTTATCAGTTGATTCCTGATCAAGTCAATTTGTTACTGCTACGGATAAATTCATTATCAACAACTCCAAGATTTAGGTTTTCTTCATCAGCTTCAAGTGAAACTAATGACAAGGAAAAAGGGAATAATGTGCATATTGGAGAGTCTGCAAACGAAGAGGCGAAGAATTGTGAACAGTCTGGAGAAGCTAAACCTGCAGATAAAACAGAGTCAGGTTCCATTTTAGATTCTCAATCTCAAACAGTCAAAGGAAGGAGGAAAGGTTTTAAACGAACAGCATTTTCTGAATCAGATTCAGATTCAGAGAGTGAATGTGACCTATCAAGGGATGATTTAATTAAACTAGTGGCTGATAAAGAAGAACTTTTGAAGTTAAAGCACAAGGAGATTAAACAAATGCAGGATAAAGTTCTGCGTACTTATGCTGATATGGAGAATCTCATGGAAAGGACGAGACGTGAAGCAGATAATTCAAAAAAGTTTGCTATACAGAATTTTGCAAAGAGTTTACTGGATGTTGCGGACAACTTGGGAAGAGCTTCCTCAGTTGTGAAGGAAAGTTTTTCAAAAATTGATACACCTAGTGACTCGGCTGAAGCGGTAAAACTTCTGAAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTATCAGAGGTACTTAACAAGTTTGGTGTAGAAAAATTTGATCCTACGAATGAGCCTTTTGATCCACACAGGCATAATGCCGTCTTCCAAATACCTGATGGTTCTAAGCCTCCAGGAACCGTTGCAGCCGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTAATTCGACCAGCGGAAGTTGGTGTAACCCAAGCAATCGAGGATGACGAGAAAAAGGGAAAAGATGGCGTAGCTGATAAGGGTTCATAG 1035 0.4087 MFVRNVLSRASTATSRTSSFSASHRPQHFSNHLHSLIPQSPNKVFYQLIPDQVNLLLLRINSLSTTPRFRFSSSASSETNDKEKGNNVHIGESANEEAKNCEQSGEAKPADKTESGSILDSQSQTVKGRRKGFKRTAFSESDSDSESECDLSRDDLIKLVADKEELLKLKHKEIKQMQDKVLRTYADMENLMERTRREADNSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIDTPSDSAEAVKLLKTLLQGVEMTEKQLSEVLNKFGVEKFDPTNEPFDPHRHNAVFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTQAIEDDEKKGKDGVADKGS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00910 344 CDD GrpE 175 324 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 PANTHER GRPE PROTEIN 66 327 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 MobiDBLite consensus disorder prediction 82 109 - -
Spst8g00910 344 Pfam GrpE 161 325 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 PRINTS GrpE protein signature 182 198 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 PRINTS GrpE protein signature 305 324 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 PRINTS GrpE protein signature 278 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 FunFam GrpE protein homolog 270 326 - -
Spst8g00910 344 Hamap Protein GrpE [grpE]. 82 326 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 MobiDBLite consensus disorder prediction 69 148 - -
Spst8g00910 344 MobiDBLite consensus disorder prediction 7 26 - -
Spst8g00910 344 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 163 270 IPR013805 -
Spst8g00910 344 ProSitePatterns grpE protein signature. 281 324 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Spst8g00910 344 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 271 326 IPR009012 GO:0006457
Spst8g00910 344 Gene3D - 142 269 IPR013805 -
Spst8g00910 344 Coils Coil 160 194 - -
Spst8g00910 344 Gene3D Head domain of nucleotide exchange factor GrpE 270 325 IPR009012 GO:0006457
Spst8g00910 344 FunFam GrpE protein homolog 154 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00910 Spst-Chr8 8025360 8028798 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00910 K03687 - gmx:100803396 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00910 8 8025360 8028798 Spst8g00910 8 8025360 8028798 ECH