Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00539 ATGGGTGATCATTTGGCCAGGGCCCAGGATTTCGAGAACAGGGCAGAGAAGAAGCTCAGCGGTTGGGGTTTGTTTGGCTCCAAATTCGAGGACGCCGCTGATCTCTTCGACAAATCCGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCAGGATCCACCTACATCAAGTTGGCGAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCCAAGCTTATGTTGACGCTGCGCATTGCTATAAAAAAACTAACATAAATGAGGCTGTATCTTGCTTAGATAATGCTGTAAATACATTTTGTGAAATTGGAAGACTCTCTATGGCGGCTAGATATTTGAAGGAAATCGCTGACTTGTATGAGTCAGAACAGAATGTCGAGCAGGCCGTTGTTTACTTTGAAAAAGCGGCTGATTTTTATGAAAATGAAGAAGTGAACACTTCTGCAAACCAGTGCAAGCAAAAAGTTGCTCAATACTCTGCCCAGCTAGAACAATATCAGAGATCAATTGAGATTTATGAAGAGATTGCTCGCCAGTCTCTCAACAATAATTTGCTGAAGTACGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTTTGTAAAGGAGACGTTATTGCTATTACCAATGCATTGGAGCGATATCAGGATTTAGATCCAACATTTTCAGGAACACGCGAATATAGACTTCTTGCAGATATTGCTGCTGCAATTGATGAAGAAGATGTTGGGAAGTTTACTGAAGTTATAAAAGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAAGAGAAACTTAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4138 MGDHLARAQDFENRAEKKLSGWGLFGSKFEDAADLFDKSANSFKLAKSWDKAGSTYIKLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVSCLDNAVNTFCEIGRLSMAARYLKEIADLYESEQNVEQAVVYFEKAADFYENEEVNTSANQCKQKVAQYSAQLEQYQRSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQDLDPTFSGTREYRLLADIAAAIDEEDVGKFTEVIKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00539 289 Gene3D Tetratricopeptide repeat domain 6 288 IPR011990 GO:0005515
Spst8g00539 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Spst8g00539 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Spst8g00539 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Spst8g00539 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Spst8g00539 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Spst8g00539 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Spst8g00539 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Spst8g00539 289 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Spst8g00539 289 Coils Coil 151 185 - -
Spst8g00539 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 8 279 IPR000744 GO:0006886
Spst8g00539 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
Spst8g00539 289 CDD SNAP 7 278 IPR000744 GO:0006886
Spst8g00539 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00539 Spst-Chr8 5098719 5101302 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00539 K15296 - gmx:100794564 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00539 8 5098719 5101302 Spst8g00539 8 5098719 5101302 ECH
Spst8g00539 8 5098719 5101302 Spst8g00539 8 5098719 5101302 PCT