Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00512 ATGACAAACGCTGAAGAACCTGCTCTTCCCAACCCTAATAATCACACTAAACAATCCACCAATGGCGATGCGGAACCTCACCACCAACACGATATCGAAGATGAAGTTGAAGACGAAGAAGATGACGAATACGACGAGGACGACGACGTCGTTCAACAACCGAATCGCGGAACTCCCCAATCCGCAGCGTCCAAGCTGCGCGAACAGCGTTTCAAGGTGGAAACCCTATCGCGAAGGTTGTCGTCGGAGCTGGTTCCGATTCGAGTGCACGACGTGGTTATAAACGGCAACACTAAGATAAAGGATTGGGTTATTGAAGCGGAGCTCAGAGACATCGAGAACGCCACCAGCATGCAGGAGCTTGTGCAAGCTTCGCAAATAGCCATTTCCAGGCTTCAAGACCTCGAAATCTTCGATTCCTGCAAGATTCGCCTTGAGGCTGGGCCCCGAGAACTCCCAAACACCGCCAATGTCATCGTGGACCTGGTCGAAACCGGTGACAAAGTGTCTGGCGAATTCAGCGTTTATACCAAACCCTCGACTAGTTCTTGGACTGCTGAAGGCGCTCTTAAGTATAAGAACTTTTTGGGCTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGTGCCAACCAAATGACTGAGGCGAGCGTCGGGGTGCATGCCCCTCGAGTTAAAGGGTTTTTAACTCCTATTATGGTGCGGATATTCATGCATTCCCAAGATTGGCAAGAGGCTTCCTCGTACAAAGATCGGTTACTGGGTGCATCTCTTGGCTTGATCTCGACAGAGCACCATGACCTAGCATACGCCCTTGGATGGCGTACCTTAGCAGATCCATCACAGATGTCATCCAGGTCTATAAGAAGGCAGCTTGGTCATGGTTTAGTGTCTTCTTTGAAGTATACATTTAAAATTGATAGGAGAAATTCTCCTATTAGGCCAAGAAAAGGATATGCTTTTCTTTCCTCCACACATGTTGGTGGCCTTACACGGGATCCCCGGAGCTTGCGATTTCTGCGTCAGGAGTTTGATTTTCGCTTTGCTGTCCCTTTTGGGTTTTACAATACAGCTCTAAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGGCATGGATTCAAAACCAAGCCATCTCCTCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTTTCTCCAGTTTGCACCCTAGGAGGGCCAAGAACATTATGGGGATTCAAAACTAGAGGATTAGGTCCTACTGAACCTCGGAGGCAAAATAGAGATGGATCTGATGATGATGACGTTGATTCCTCTGGATGGGACTTCATTGGCGGAGATCTTGCTGTTACTGCTTTTGCTGATTTCTCTTTTGATCTTCCAATTAGGTGGTTGAGAGAACATGGAATACATGGTCATGTTTTTGCTGGTTCTGGGAATGCTGTTAAACTAACTCAGAACGAATATAGGAACTTCTCTTCTCGGAAGTTCTTAGAATCCTTTCGAATGTCAGTGGGATGTGGATTTGTTATTCCTACTAGACTCTTCCGCCTAGAGGGTAACTACTTTTACATACTCAGAAAGGGTGAGCATGATCGTGGAAAGACTGGATTTAGGTTTAGTTTCTCAGCTTCTTCGTAG 1623 0.4677 MTNAEEPALPNPNNHTKQSTNGDAEPHHQHDIEDEVEDEEDDEYDEDDDVVQQPNRGTPQSAASKLREQRFKVETLSRRLSSELVPIRVHDVVINGNTKIKDWVIEAELRDIENATSMQELVQASQIAISRLQDLEIFDSCKIRLEAGPRELPNTANVIVDLVETGDKVSGEFSVYTKPSTSSWTAEGALKYKNFLGYGDLWDASLAYGANQMTEASVGVHAPRVKGFLTPIMVRIFMHSQDWQEASSYKDRLLGASLGLISTEHHDLAYALGWRTLADPSQMSSRSIRRQLGHGLVSSLKYTFKIDRRNSPIRPRKGYAFLSSTHVGGLTRDPRSLRFLRQEFDFRFAVPFGFYNTALNLGISAGAVFPWGHGFKTKPSPLPERFYLGGDFSPVCTLGGPRTLWGFKTRGLGPTEPRRQNRDGSDDDDVDSSGWDFIGGDLAVTAFADFSFDLPIRWLREHGIHGHVFAGSGNAVKLTQNEYRNFSSRKFLESFRMSVGCGFVIPTRLFRLEGNYFYILRKGEHDRGKTGFRFSFSASS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00512 540 MobiDBLite consensus disorder prediction 1 69 - -
Spst8g00512 540 Gene3D membrane protein fhac 86 165 - -
Spst8g00512 540 MobiDBLite consensus disorder prediction 1 20 - -
Spst8g00512 540 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 15 537 IPR039910 -
Spst8g00512 540 MobiDBLite consensus disorder prediction 34 49 - -
Spst8g00512 540 MobiDBLite consensus disorder prediction 409 432 - -
Spst8g00512 540 FunFam Outer membrane OMP85 family protein 86 165 - -
Spst8g00512 540 Pfam Omp85 superfamily domain 194 537 IPR000184 GO:0019867
Spst8g00512 540 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 171 539 - -
Spst8g00512 540 FunFam Outer membrane OMP85 family protein 176 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00512 Spst-Chr8 4832882 4837510 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00512 K07277 - gmx:100802876 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00512 8 4832882 4837510 Spst8g00512 8 4832882 4837510 ECH
Spst8g00512 8 4832882 4837510 Spst8g00512 8 4832882 4837510 PCT