Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00468 ATGCACCAGAATATCAAGGCTCACGAGAGCAGGAAGCAGATATTTTCCAAGCATGCATCAAGAGAGAACCCTTTCCAGCATCAACCAAAGCCAGCTACTGAGCCGCCACCTTGGTCAAATTTGTTGAATGCATCTGAGAATTTGCAACAAGAATTGACATTACCATCAAATGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCTGTGGACAACACTCCATCTCAGCAAATGGAAATGTCTATGCTACAGCAGGTTGTTCCTCGGCAAGAAAACTATAATCAGAGTAGGTCAACTGCTCTGCACAATGTGGAATCTACTATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAATTCTTTATTGAGGAATCTCAACCGAATATCATCAAATAGGTTATCTGCTTCACCGCTTGAGTTTCAATGCAGGACAAGAGACCATAAACCCGTCCTAGGATCCTTGTGTTCTGATCTTAATAAAGTCGATTCTGAAGACGGAAAGCGAGAGAAAATGGAGGTTTATCCCCAAAAAGTAAAGGAAGCTTGCACGTATAATTGTTTTTTAAGGGAAGAAATTGAAAAGGAGGCTTTTGAAGGGTTAGTAATAGTATCTTCTGCATTGAAAACTGCCACCTTCTGCCAATTCCATGTTCAGAACCTGCATTTAAGAGGACTTTCTCTATATTATAATAATCTTGGAACAATGTTACCCCAGAAGCAAGGTGAAGAAACCATGATGTCAAGCCTCAATGAAACTATTGAGCGTGAAGAGAGAGAGGAAGAGAAGGTGGGTGGTTCACATTCCAGTTTGAGAAGCCTTCTGTGGCATGGTGGGTCTGTTTATGATGCATGGTTCAGCTGTGCCTCAAATCAGGTTGCACAGGTTCTGTTAACACTGCCATGCTCTTTCGCTCAGCTGGGAATGCTTTCTGGCATCATATTCCAAGTCTTCTATGGATTAATGGGAAGTTGGACTGCTTATTTGATTAGCATTCTGTACATAGAGTACAGGAGCAGAAAAGAGAAAGAGAACGTCAACTTCAAAAACCATGTCATTCAGTGGTTTGAAGTGCTGGAAGGTTTACTAGGTCCATACTGGAAAGCCGTTGGCTTGGCCTTCAATTGCACTTTTCTTCTCTTTGGATCTGTCATCCAGCTTATAGCTTGTGCAAGTAACATATACTACATAAATGACCACTTGGACAAGAGGACCTGGACTTACATATTTGGAGCATGCTGTGCCACAACAGTGTTCATACCTTCATTTCACAACTACAGGATTTGGTCTTTCCTTGGTCTTGGCATGACCACATACACAGCTTGGTACTTGACCATTGCAGCCATCGTTCATGGCCAGGTTGAAAATGTGACTCACACGGGCCCCAAAAAATTGGTTTTGTATTTCACGGGAGCCACCAACATTCTCTATACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTTTATGCCACTCTTTTTGTATTCACACTCACCCTACCATCTGCCATTGCGGTTTACTGGGCCTTTGGTGACCAACTCCTGGACCACTCCAATGCCTTCTCTCTTCTCCCCCGCACTGGTTGGCGTGATGCTGGTGTCATCTTAATGTTGATTCACCAGTTTATCACTTTCGGATTTGCTTGCACACCATTGTATTTTGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGCATATGTTTGAGGGCACTTGCAAGGTTGCCTGTGGTGATACCAATATGGTTTTTGGCTATTATTTTCCCCTTCTTTGGCCCTATTAACTCTGCTGTGGGGGCTCTTTTGGTTACCTTCACCGTCTATGTCATCCCTGCTTCTGCTCATATGCTCACTTACAGGTCTGCTTCTGCACGACAGAACGCTGCTGAGAAATTGCCCTTGTTCATCCCAAACTGGACTATAATGTATGTGATAAATGCATTTGTGATGGTGTGGGTTCTAGTGGTGGGATTTGGATTTGGAGGGTGGGCTAGCATGGCAAACTTCATCAAACAGGTTGACAAATTTGGACTCTTTGCCAAGTGCTACCAGTGCCCCCCGCATAAAACCGCAGGTTCCAACCAAACACTGCATCACTGA 2232 0.4382 MHQNIKAHESRKQIFSKHASRENPFQHQPKPATEPPPWSNLLNASENLQQELTLPSNGAPVSNQLRRRLAVDNTPSQQMEMSMLQQVVPRQENYNQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHNSLLRNLNRISSNRLSASPLEFQCRTRDHKPVLGSLCSDLNKVDSEDGKREKMEVYPQKVKEACTYNCFLREEIEKEAFEGLVIVSSALKTATFCQFHVQNLHLRGLSLYYNNLGTMLPQKQGEETMMSSLNETIEREEREEEKVGGSHSSLRSLLWHGGSVYDAWFSCASNQVAQVLLTLPCSFAQLGMLSGIIFQVFYGLMGSWTAYLISILYIEYRSRKEKENVNFKNHVIQWFEVLEGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAIVHGQVENVTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLYATLFVFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRTGWRDAGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVTFTVYVIPASAHMLTYRSASARQNAAEKLPLFIPNWTIMYVINAFVMVWVLVVGFGFGGWASMANFIKQVDKFGLFAKCYQCPPHKTAGSNQTLHH 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00468 743 ProSitePatterns Syntaxin / epimorphin family signature. 98 137 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst8g00468 743 Pfam Transmembrane amino acid transporter protein 306 699 IPR013057 -
Spst8g00468 743 SUPERFAMILY t-snare proteins 58 147 IPR010989 GO:0016020|GO:0016192
Spst8g00468 743 Coils Coil 269 289 - -
Spst8g00468 743 PANTHER OS05G0424000 PROTEIN-RELATED 312 695 - -
Spst8g00468 743 CDD SNARE_syntaxin5 96 162 - -
Spst8g00468 743 MobiDBLite consensus disorder prediction 1 18 - -
Spst8g00468 743 SMART tSNARE_6 87 154 IPR000727 -
Spst8g00468 743 Gene3D - 1 147 - -
Spst8g00468 743 MobiDBLite consensus disorder prediction 1 41 - -
Spst8g00468 743 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 92 154 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00468 Spst-Chr8 4438732 4456675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00468 286 729 Organic Solute Cotransporters AT2G21050 78.829 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00468 K13946 - gmx:100817572 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00468 8 4438732 4456675 Spst8g00468 8 4438732 4456675 ECH
Spst8g00468 8 4438732 4456675 Spst8g00468 8 4438732 4456675 PCT