Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00450 ATGGAGGATCGGGATACGAGGCGGATGGCGACGGCCACTAAGTTATCTGATGTGGTACTGGACTGCGTGATGCCGTACATCCACGACCCCAAGGACCGGGACGCCGTGTCGCAGGTGTGTCGCCGGTGGTATGAGCTCGACTCTCTCACGCGGAAGCACGTCACGATTGCGCTCTGCTACACCACCACGCCGGACCGGCTCCGGAGGCGTTTCCCGCACCTAGAGTCGCTGAAGCTGAAGGGGAAGCCCCGGGCGGCGATGTTCAACCTCATACCGGAGGATTGGGGAGGTTTCGTGACGCCGTGGGTTAAGGAGATCTCTCATTACTTCGATTGTTTGAAGTCGCTTCACTTTCGCCGCATGATTGTGACGGATTCCGATCTTCAGGTTCTTGCTCGCTCGCGCGGTCACATACTTCAGGCGCTCAAGCTCGATAAGTGCTCTGGATTCTCCACCGATGGCCTTTATTTTATCGGTCGCTTTTGCAGGAATTTGAGAATCTTGTTTTTAGAGGAAAGCTCACTTGTTGAGAATGATGGTGACTGGCTCCATCAGCTTGCTTTGAATAATACAGTTCTTGAAACACTAAATTTTTATCTCACTGATATTGCCAATGTCCGAATCCAGGACCTTGAACTTATAGCCAGAAATTGCCCCAACTTAAACTCGGTGAAAATTACTGATTGTGAAATATTGGATTTGTTAAACTTCTTTCGATGTGCATCTGCCCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAATCAGAGAAGTACGCTGCTATATCATTGCCAGCAAAATTAAGTCGTCTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCTTACTGAAAAAATTGGATCTTTTGTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAAAGGTGCCCCAACTTGGAGGTACTTGAGTCAAGGAACGTAATTGGAGACAGAGGATTAGAAGTGCTTGCTCGTTGTTGTAGGAAGCTTAAAAGGCTTCGAATTGAAAGAGGTGATGATGATCAAGGAATGGAAGATGAAGAAGGTGTTGTTTCCCAGAGAGGGCTAATTGCTTTGTCACATGGCTGTCCAGAGCTTGAATATATGGCCGTTTATGTATCCGACATTACAAATGCATCTCTAGAACACATTGGTACTCATTTAAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTAGACCGTGAAGAGAAAATAACTGATTTGCCACTTGACAATGGAGTGAGAGCTTTACTGAGGGGTTGTGACAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGCTTGACCGATGTGGGACTGGGTTACATAGGACAATACAGCCCCAACGTGAGATGGATGCTTCTTGGGTATGTGGGAGAGACTGATGAAGGGCTTTTGGAATTCTCTAGGGGCTGCCCCAGTCTTCAGAAACTTGAAATGAGGGGATGCTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTAACTTCTCTTAGGTACCTATGGGTCCAAGGGTATGGAGCATCTCCTTCTGGGCGTGATCTTTTGGCAATGGCTCGCCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTGGTTGTGAACAATCAACCGGAAGAGCCTGTAGTTGTCGAGCATCCGGCACATATTCTTGCATATTACTCCCTCGCTGGCCCAAGGACAGATTTTCCAGATACTGTTATACCTTTGGATCTTGCAACATATGTTGACACGTAA 1782 0.468 MEDRDTRRMATATKLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVKEISHYFDCLKSLHFRRMIVTDSDLQVLARSRGHILQALKLDKCSGFSTDGLYFIGRFCRNLRILFLEESSLVENDGDWLHQLALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLNSVKITDCEILDLLNFFRCASALEEFCGGSYNEESEKYAAISLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRKLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDEGLLEFSRGCPSLQKLEMRGCSFFSEYALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVNNQPEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDLATYVDT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00450 593 Gene3D Ribonuclease Inhibitor 52 589 IPR032675 -
Spst8g00450 593 SUPERFAMILY F-box domain 11 51 IPR036047 GO:0005515
Spst8g00450 593 FunFam Coronatine-insensitive protein 1 52 588 - -
Spst8g00450 593 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 31 249 - -
Spst8g00450 593 Pfam F-box 13 53 IPR041567 -
Spst8g00450 593 FunFam F-box/LRR-repeat protein 4 12 51 - -
Spst8g00450 593 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Spst8g00450 593 CDD F-box_AtTIR1-like 14 51 - -
Spst8g00450 593 Gene3D - 1 51 - -
Spst8g00450 593 SUPERFAMILY RNI-like 112 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00450 Spst-Chr8 4247330 4251376 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00450 K13463 - gmx:100793081 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00450 8 4247330 4251376 Spst8g00450 8 4247330 4251376 ECH
Spst8g00450 8 4247330 4251376 Spst8g00450 8 4247330 4251376 PCT