Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst8g00403 | ATGGGCATGAAAAATGGCGAGGGAAGTGAAGGAGGGGCATTGCAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTTCCGCAGAGGACGCCGCTGTTGACTCCCGTCGCCGCCAGGTTTCCGCCGAATAGTTACTCTTGGAATGATGTTTGCGGCGGTGGTTGTGGATTCGCTATTGCTATCTCTGAATCAGGGAAGCTCATCACGTGGGGCTCGACAGATGATTTAGGCCAAAGCTATGTGACTTCTGGCAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCCTCTATAGTAAAAGCTGCAGCAGGGTGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAATCATCCACAGGGGTAAGTGTTGAAAAGGATGTGCAAGGAATGCATAGTCAATTATCGGCAGAGCAAGTAAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCGGTAAAAGTGCAGAAGATAATACAAAGCGAAGGAGAGTATCTACAGCAAAGCAAACGGCTGAAAGCTCGTCATCCAGTGATGATAGTCTGACAGCATATCCATGTCTTGTCACACTAAATCCAGGGATAAGGATAGCTAGTGCTGCTGCTGGTGGACGCCATACTCTAGCATTGTCAGATACAGGACTGGTGTGGGCTTGGGGCTATGGAGGTGAAGGGCAGCTTGGCTTGGGTTCAAGAATACGTGTGGTAGCCTCTCCTCATCTTGTTCCATGTATTGATTCCTCTTATTATGGTAAAGATAGATCTGCTACACTGGCCCGAGGAAGCATGGGTTCAGAGGGACAAAGTGTTAGAGTTCCAGGAAGTTACATAAAGAGAATTGCATGTGGAGGTCGACACAGTGCAGTAATTACAGATGCTGGAGCCATGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAACTACTGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGAGGGAGTTGCTGCAGGACTCTGGCATACGGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGGAATCAGTTTGGGCAGCTAGGAACAGGTGCTGATCAAGCTGAGACTCTACCAAGATTAGTGGATTCTCCGAGTTTGGAAAATATGCATGCAAAGAATGTATCATGTGGTGCTCGTCACACTGCTTTAGTAACAGAGCGGGGAAGAGTCTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCTGAAGTCACCATTGAAGGTTGTGTTCCTAAAAATGTTGCTTGTGGTTGGTGGCACACGCTTCTTCTGGCCGAGTCCCCCACTTGA | 1434 | 0.4861 | MGMKNGEGSEGGALQRVLYMWGYLPGALPQRTPLLTPVAARFPPNSYSWNDVCGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGESSTGVSVEKDVQGMHSQLSAEQVSPRSQGSRSTGGTASGKSAEDNTKRRRVSTAKQTAESSSSSDDSLTAYPCLVTLNPGIRIASAAAGGRHTLALSDTGLVWAWGYGGEGQLGLGSRIRVVASPHLVPCIDSSYYGKDRSATLARGSMGSEGQSVRVPGSYIKRIACGGRHSAVITDAGAMLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIHIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSPSLENMHAKNVSCGARHTALVTERGRVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVPKNVACGWWHTLLLAESPT | 477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst8g00403 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 371 | 424 | IPR000408 | - | |
| Spst8g00403 | 477 | MobiDBLite | consensus disorder prediction | 151 | 180 | - | - | |
| Spst8g00403 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 411 | 421 | IPR000408 | - | |
| Spst8g00403 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 425 | 475 | IPR000408 | - | |
| Spst8g00403 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 103 | 116 | IPR000408 | - | |
| Spst8g00403 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 225 | 241 | IPR000408 | - | |
| Spst8g00403 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 378 | IPR000408 | - | |
| Spst8g00403 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 420 | 441 | IPR000408 | - | |
| Spst8g00403 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 122 | 138 | IPR000408 | - | |
| Spst8g00403 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 67 | 119 | IPR000408 | - | |
| Spst8g00403 | 477 | SUPERFAMILY | RCC1/BLIP-II | 19 | 475 | IPR009091 | - | |
| Spst8g00403 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 425 | 472 | IPR000408 | - | |
| Spst8g00403 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 319 | 366 | IPR000408 | - | |
| Spst8g00403 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 370 | 420 | IPR000408 | - | |
| Spst8g00403 | 477 | Gene3D | - | 9 | 159 | IPR009091 | - | |
| Spst8g00403 | 477 | MobiDBLite | consensus disorder prediction | 151 | 206 | - | - | |
| Spst8g00403 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 473 | - | - | |
| Spst8g00403 | 477 | Gene3D | - | 192 | 274 | IPR009091 | - | |
| Spst8g00403 | 477 | Gene3D | - | 275 | 477 | IPR009091 | - | |
| Spst8g00403 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 239 | 318 | IPR000408 | - | |
| Spst8g00403 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 222 | 251 | - | - | |
| Spst8g00403 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 103 | 127 | - | - | |
| Spst8g00403 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 305 | 315 | IPR000408 | - | |
| Spst8g00403 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 319 | 370 | IPR000408 | - | |
| Spst8g00403 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 225 | 235 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst8g00403 | Spst-Chr8 | 3879635 | 3884632 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst8g00403 | - | - | gmx:100807837 | 873.233 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst8g00403 | 8 | 3879635 | 3884632 | Spst8g00403 | 8 | 3879635 | 3884632 | ECH | |
| Spst8g00403 | 8 | 3879635 | 3884632 | Spst8g00403 | 8 | 3879635 | 3884632 | PCT |