Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00392 ATGTCAATATTGCTTTTTGTAGGGCTGTGCTTCATCTTGGCAAGTTCTATTGGTAAATGTCAGGCAGATATGCTTGACAAAATGGGACATGTAAAGTTGCTAACGCAAACTGGTATCAATGCGATAGAAGAGGGATCTGGGCAATGCGATACTGGATATCCTGACAAAACTACTGTGGCATGCATGATCAATGCAGAAATCGGTGCTGTTTTGGCTGTCATGAGAAGAAATGTTAGATGGGGAGTTCATTATATGTCAGATGATGATCACTTGGATCATTTCCTTGTTCAGTCGCTGAAGGCACTAAGGAGGCAAATTTTTTCTTGGCAGGATCAGTGGCATGTCATAAGTCCTGCCTTGTATCTCCATCCTTTTCTGGATGTGATTCAATCAGATGAAACTGGTGCACCAATTACTGGTGTCGCTCTATCATCTGTTTACAAGATTTTAACCTTGGATGTAATTGATCAAAATACAGTTAACGTTCGGGATGCCATGCACTTGGTAGTTGATGCTGTTACAAGTTGCAGGTTTGAGGTGACTGATCCTGGATCGGAAGAAGTAGTATTAATGAAGATATTACAAGTTCTTCTAGCATGTGTAAAAAGCAAAGCATCTATGATGCTGAGTAACCAACATATTTGCACCATAGTGAATACTTGTTTCCGTATTGTTCATCAAGCAGGAACCAAAAGTGAATTGTTGCAGCGGATAGCACGTTACACAATGCATGAACTTGTTCGGTGTATTTTTTCTCACCTACAAGATATTAACAACAGAGAAGTTATATTGCTAAATGGCACCACTGCTTTAAAGCAAGAGATTGGCGGGCTAAATAACGAGCATAATTCTGCAAACAAACAATTGGAGAATGGGAGCTTGACTTCTGCAAGTAATGGCCAACCCTTATCCACAGGCATTGCTTCTAGTGGGTTGAGTGATGTGGCAGCAACTCTAGCGGATGAAGACACAGCCATTGCTAGCAGTGGCAAAGAGACTGATCTCAATGAATTACAGCTTTTGAATGAAACATATGGGATTCCCTGCATGGTGGAAATATTTCACTTTTTGTGTTCTTTGTTGAATGTTGCTGAACATATGGGAATGAGTCCCCGATCAAACACGATAGCATTTGATGAAGATGTGCCCCTTTTTGCCTTAACTTTGATTAATTCAGCCATAGAGTTGGGAGGGCCTTCCTTTCATCGACACCCTAGATTGCTGAGCTTAATTCAGGATGAATTATTCCGCAATCTTATGCAATTTGGTTTGTCAATGAGTCCTCTTGTACTTTCAATGGTATGTAGCATTGTTCTAAATTTGTATCACCATCTTCGTACAGAACTCAAATTACAGCTAGAAGCATTTTTTTCTTGTGTAATTTTGAGGCTTGCACAAAGCAAATATGGTGCTTCATATCAGCAACAGGAAGTTGTCATGGAGGCCCTTGTTGACTTTTGCAGGCAAAAAGCATTCATGGTGGAGATGTATGCTAATTTTGACTGTGATCTGACTTGTAGTAATGTCTTTGAAGACATTGCTAATTTGTTGTCCAAAAGTGCATTTCCTGTGAACAGTCCATTGTCTTCCATGCATATTCTTGCTTTGGATGGTCTTATTGCTGTTATGCAAGGAATGGCTGAAAGGATAGGCAATGGATCTTTAAGTTTAGAACAATCTCCTGTGAATCTTGAAGAGTATACTCCGTTCTGGCAGGAAAAGTGTGGAAGTTTTTGTGATCCGAATGATTGGGTTCCTTTTGTATGCAGGAGGAAGTACTTCAAGAAAAGATTGATGATTGGAGCTGATCATTTTAATCGTGATACTAAGAAAGGTCTTGAGTTCCTCCAAGGAACTCACCTTTTGCCTGACAAGCTTGATCCCCAAAGTGTTGCCTGCTTTTTCAGATACACTGCCGGGTTGGATAAGAATCTCATTGGTGATTTTCTAGGCAATCATGATGAATTCTGCATTGAGGTTCTTCATGAATTTGCTCGAACATTTGATTTCAAAGACATGATGTTAGACACTGCCCTCCGCCTATTTTTGGAGACTTTTAGACTGCCTGGAGAATCACAGAAGATACAGAGGGTGCTTGAAGCTTTCTCTGAACGATATTATGAACAGTCTCCACAGGTCCTAGCCAATAAGGACGCTGCGCTGTTGTTATCATACTCAATTATAATGCTTAATACAGATCAGCACAATACACAGGTCAAGAAGAAGATGACAGAAGAGGATTTTATCCGGAATAATAGGCGAATAAATGGTGGCAATGATCTACCCCGAGAGTTCCTGTCTGAACTTTACCATTCAATTTGTAAGAATGAGATTCGAACAACTCCTGAGCAAGGTTCTGGTTTCCCTGAAATGACCCCAAGTCGGTGGATATATCTCATGCACAAGTCAAAAAAATCTGCTCCATTCATCGTTTCTGATTCCAAAGCATACCTTGATTATGATATGTTTTCTATATTGTCTGGTCCAACAATTGCTGCCATTTCTGTGGTATTTGATAATGCTGAGAATGCAGAGGTATACGAAACATGTATGGATGGTTTCATAGCTGTTGCAAAGATATCAGCGTACTATCATCTTGAAAATATACTGGACGATTTGGTTGTGTCACTTTGTAAGTTTGTTACTGTATTTGATCCATTATCTGTTGAGGAGTCAATCCTAGCCTTTGGAGATGACATGAAAGCAAGAATGGCAACTGAGACAGTTTTCACTATTGCAAATAGGTATGGTGATTTCATCCGCACAGGGTGGAGGAATATTCTTGATTGCATCCTAAAATTTCACAAGTTAGGGCTTCTTCCAGCTCGTATGGCCAGTGATGCAGCTGAAGAGTCAGAGCTTTCTGCAGAAACTGAAGATGGGGGGAAGCGAAATACTAATACTTTGTCTTTATCGCGTCTTCCATCTGTAAGTACTCCAAAGAGATCCTCAGGATTGATGAGCAGGTTTAGTCAACTCTTATATCTTGGTGCTGAAGAGCCAAAATCAGTTCCTACTGAGGAACAGCTTGCTGCTCAGCAATCCACCATTCAAACAATTCAGAAGTGTCACATTGACAGCATATTCTCTGAGAGTAAATTTTTGCAAGGTGAATCTCTATTGCAGCTTGCAAAAGCACTCACTAGTGCAGGAGTGAGACCTAAGAAAGGGAACAGCACATCTGAGGATGAAGATACTTCGGTTTTCTGCCTGGAGTTATTGGTAGCAATCACTCTGAATAACAGGGATAGAATTGAACTTCTTTGGCAGGGTGTTTATGAGCATATTGCCAACATTGTTCAGTCAACTGTGATGCCTTGTGCATTGGTAGAGAAGGCTGTTTTTGGCCTCCTACGAATTTGTCATCGCTTACTTCCCTACAAAGAGAACATTACTGATGAACTTCTGAGGTCTCTGCAACTTGTCTTGAAGCTTGATGCACGTGTTGCTGATGCATACTATGAGCAGATAACACAGGAAGTTAGTCACCTCATGAAGGCAAATGCGTCCCATATTAGATCTCATTTAGGATGGCGGACAATTACATCACTGCTTTCCATCACTGCTAGACACCTGGAAGCAGCTGAGGCTGGTTTTGATGCATTGTTGTTCATTATGTCAGATGGAGCCCACTTGCTTCCAGCTAATTATGTTCTCTGTGTAGATGCAGCGAAGCAGTTTGCTGAATCTCGTGTTGGGCAGGTAGAACGGTCTGTAATGGCCCTTGATCTCATGTCAGGGTCTGTCACTTGTCTAGAGAAGTGGGCTAATGATGCTAAGCAGGCAACGAAAGAAGAGGAAGTGGCAAAGGTGCTAGAGGATATTGGGGACATGTGGTTGAGACTCATACAGGGACTAAAAAAACTATGTATGGACCAGAGAGAGGAGGTTAGAAACCACGCGTTGCTATCTTTGCAAAATTGCTTGGTCGGATCAGGTGGGATTAATCTCTCACATAGCTTGTGGTTACAATGTTTTGATCAAGTGCTCTTCTCTGTTCTTGATGACCTGATTGAAATTTCTCAAAAACACTCTCAAAAGGACTACCGGAACATAGAAGGAACACTTGTTCTTGCTTTAAAGCTCTTGTGTAAAGTTTTCCTCCAGTTAATCCAGTATCTGTCACAATTGCCAGACTTCAGCATATTATGGTTGGCTATACTAAGTCGGTTGGAAATTTATATGAAGGTGAAAATTAGGGGAAGAAGAAGCGAGAAGCTTCAAGAACTTGTGCCTGAGCTTCTTAAGAACACTTTGCTTGTTATGAAAGCAGGCCATGTATTAGTGCGGAACAGTAGTGTAGATGGAAGTAGTTTATGGGAATTGACATGGTTGCATATAAATAATATTGCTCCGTCAATGCAATCTGAGGTGTTCCCCGAGCAAGACTCCGAGCATTTGCAGCAAAAACTGACTGAAAAGGCTGAAGGTTTGGTACCTGATGAAAACAATTCTGTGTCTTCAAATGAAACAGCAGGTCAAGATGGTCCTGGTATTAGTTAA 4503 0.4099 MSILLFVGLCFILASSIGKCQADMLDKMGHVKLLTQTGINAIEEGSGQCDTGYPDKTTVACMINAEIGAVLAVMRRNVRWGVHYMSDDDHLDHFLVQSLKALRRQIFSWQDQWHVISPALYLHPFLDVIQSDETGAPITGVALSSVYKILTLDVIDQNTVNVRDAMHLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASMMLSNQHICTIVNTCFRIVHQAGTKSELLQRIARYTMHELVRCIFSHLQDINNREVILLNGTTALKQEIGGLNNEHNSANKQLENGSLTSASNGQPLSTGIASSGLSDVAATLADEDTAIASSGKETDLNELQLLNETYGIPCMVEIFHFLCSLLNVAEHMGMSPRSNTIAFDEDVPLFALTLINSAIELGGPSFHRHPRLLSLIQDELFRNLMQFGLSMSPLVLSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSKYGASYQQQEVVMEALVDFCRQKAFMVEMYANFDCDLTCSNVFEDIANLLSKSAFPVNSPLSSMHILALDGLIAVMQGMAERIGNGSLSLEQSPVNLEEYTPFWQEKCGSFCDPNDWVPFVCRRKYFKKRLMIGADHFNRDTKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLIGDFLGNHDEFCIEVLHEFARTFDFKDMMLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQVLANKDAALLLSYSIIMLNTDQHNTQVKKKMTEEDFIRNNRRINGGNDLPREFLSELYHSICKNEIRTTPEQGSGFPEMTPSRWIYLMHKSKKSAPFIVSDSKAYLDYDMFSILSGPTIAAISVVFDNAENAEVYETCMDGFIAVAKISAYYHLENILDDLVVSLCKFVTVFDPLSVEESILAFGDDMKARMATETVFTIANRYGDFIRTGWRNILDCILKFHKLGLLPARMASDAAEESELSAETEDGGKRNTNTLSLSRLPSVSTPKRSSGLMSRFSQLLYLGAEEPKSVPTEEQLAAQQSTIQTIQKCHIDSIFSESKFLQGESLLQLAKALTSAGVRPKKGNSTSEDEDTSVFCLELLVAITLNNRDRIELLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICHRLLPYKENITDELLRSLQLVLKLDARVADAYYEQITQEVSHLMKANASHIRSHLGWRTITSLLSITARHLEAAEAGFDALLFIMSDGAHLLPANYVLCVDAAKQFAESRVGQVERSVMALDLMSGSVTCLEKWANDAKQATKEEEVAKVLEDIGDMWLRLIQGLKKLCMDQREEVRNHALLSLQNCLVGSGGINLSHSLWLQCFDQVLFSVLDDLIEISQKHSQKDYRNIEGTLVLALKLLCKVFLQLIQYLSQLPDFSILWLAILSRLEIYMKVKIRGRRSEKLQELVPELLKNTLLVMKAGHVLVRNSSVDGSSLWELTWLHINNIAPSMQSEVFPEQDSEHLQQKLTEKAEGLVPDENNSVSSNETAGQDGPGIS 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00392 1500 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 102 1464 - -
Spst8g00392 1500 SMART sec7_5 591 778 IPR000904 GO:0005085|GO:0032012
Spst8g00392 1500 MobiDBLite consensus disorder prediction 1481 1500 - -
Spst8g00392 1500 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 348 509 IPR032691 -
Spst8g00392 1500 Gene3D - 671 788 IPR023394 -
Spst8g00392 1500 ProSiteProfiles SEC7 domain profile. 587 776 IPR000904 GO:0005085|GO:0032012
Spst8g00392 1500 CDD Sec7 595 778 IPR000904 GO:0005085|GO:0032012
Spst8g00392 1500 FunFam ARF guanine-nucleotide exchange factor GNOM 588 670 - -
Spst8g00392 1500 MobiDBLite consensus disorder prediction 1463 1477 - -
Spst8g00392 1500 MobiDBLite consensus disorder prediction 961 983 - -
Spst8g00392 1500 SUPERFAMILY ARM repeat 188 1390 IPR016024 -
Spst8g00392 1500 SUPERFAMILY Sec7 domain 592 779 IPR035999 GO:0005085|GO:0032012
Spst8g00392 1500 Gene3D - 588 670 - -
Spst8g00392 1500 FunFam ARF guanine-nucleotide exchange factor GNOM-like 670 788 - -
Spst8g00392 1500 Pfam Sec7 domain 595 778 IPR000904 GO:0005085|GO:0032012
Spst8g00392 1500 MobiDBLite consensus disorder prediction 950 983 - -
Spst8g00392 1500 MobiDBLite consensus disorder prediction 1461 1500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00392 Spst-Chr8 3830395 3836770 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00392 K18443 - gmx:100784083 2680.97