Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00375 ATGCCTTTTATTTCCAACATTCAGCGTCAATCTGATTTCAACCTCATCGATTCCAACACTCCCATTGTTATAGACAATGGCGCTTCCTATTTCCGCATAGGTTGGGCAGGAGAGTCTGAACCTCGAGTTATCTTTCGCAATATTGTGCAAAGGCCACGCCACAAAGTAACCGGGGAAACTGTCACTATCGTGGGTGACCATGATCCTGCGTTACTGAAATACTTTGACTGCACTCGGTCAGGACCACGTTCTGCATTTGACAGTAATGTTGTCTACCAGTTTGAAACAATGGAATATATTCTTGATTTTGGATTTGACCGGATGGGTGCAACTACTGAGATTGATCATCCTGTCCTCATCACCGAATGTGTATGCAACCCAGTCCAATCTCGTTGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCAATTGCCTTTGGTGTTGATGTGGCATTCAGCTATAAATATAATCAACAACAAGGAGTTTGTGCTAAAGATGGTCTTGCTTTGTGTCCTGGATTCAACACTACCCATGTGATTCCGTTTGTAGACGGGGAGCCAGTGTATGAAGGATGCTGTCGTACTAATATTGGTGGGTTCCATGTGACTAATCAGTTGAAGCAACTCCTTTCACTTAAATATCCTTATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACAAGATTATGCTTCGGAAGTTCGGTTGTTTCAGAACGGAGCCATGGAAGCCGAAGGAAAAACCAGATATTGGCAACTCCCTTGGGTTCCACCCCCAACTGATGAGCCTCCTTCCGAGGAAGAGATTGCAAGAAAGGCAGCAATTAAAGAGAAACAAGGCCAAAGGCTCCGTGAAATGGCTGAGGCAAAGAGGTCTTCTAAAATAAATGAACTGGAAAATGAATTGCACGGTTTAGAGTTTCTTTTGCATCAGCTTGAACAAGTGGAAGAGAGTGAGGTTCCACCATTCCTGGCAGAAACTGGCTATGTCACTAAGCAGGAGATAGAGTCTGCACGTAATAAAGTTATGCAATCTTTACGGAAAGCAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAGAAGGATGATCTTGCCACTAGCGAGAAGTATTCTCTTATAAACATTCCCGATGATATGTTGAGTGAAGAGCAGCTCAATGAAAAGAAGAAACAGTTGTCCCTCAAATCTATGGCCGAAGGGAGGCAGCGATTAAAACAGAAACGCTATGAAGAGGAATTGGAACGAGAGAGAAAACAACAGCTAGAGGAGGAGAAACGCTTAGAGAACCCGGAGCTTTATTTGGAGCAATTGCATGCTAGATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTTAAGACAAATGGAGGCAGTTCAAACGGAAATAATCTGTCTAGTGGTATTGGCCGTGGTGAAAGATTGAATGCTGCTCAGAGGGAAAGAATGCGTCTTCTGACAACTGCAGCTTTTGACCGTGGTAAGGGTGAAGATACATTTGGTGCTAGAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAAAGATTATAGTAACGATGATGATGAAGAACCTGATGAAGATGAAGTAGAGCTGGCCCGCATCTCCTCTAGGCTACAGGACTTGGATCCAACATTTATACCCAAGTTAGATGCTGGTACCACTCAACCTGCTGAGGTGCCTCGCTTTCGTCCTCTGACCAAAGAAGATTTTCAGATTGTTCTTGGGGTCGAAAGATTCAGATGTCCTGAAATACTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGATTAGACGAGATGGCGGGGGTCTCAATAAGGAGATTACCATACAAGGATGAAAGCTTGGAAGAGAGACTGACCAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAACATAGTGAGAGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCTGCTACTTTTGCCTCAGACCCACAGTTCCATATGCAAACTTTCAGTAGACTGGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAAATATCAACTGCGGCATACATTGTGA 2169 0.4334 MPFISNIQRQSDFNLIDSNTPIVIDNGASYFRIGWAGESEPRVIFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFETMEYILDFGFDRMGATTEIDHPVLITECVCNPVQSRCKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGVCAKDGLALCPGFNTTHVIPFVDGEPVYEGCCRTNIGGFHVTNQLKQLLSLKYPYHLARFTWEKVEDLKMEHCYIAQDYASEVRLFQNGAMEAEGKTRYWQLPWVPPPTDEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVEESEVPPFLAETGYVTKQEIESARNKVMQSLRKAKGEPKNEQAETEKDDLATSEKYSLINIPDDMLSEEQLNEKKKQLSLKSMAEGRQRLKQKRYEEELERERKQQLEEEKRLENPELYLEQLHARYKDLSERVDQQKRLKTNGGSSNGNNLSSGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDYSNDDDEEPDEDEVELARISSRLQDLDPTFIPKLDAGTTQPAEVPRFRPLTKEDFQIVLGVERFRCPEILFNPNWIGVDQVGLDEMAGVSIRRLPYKDESLEERLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPINIVRALDPVMDAWRGAATFASDPQFHMQTFSRLDYYEKGEDWLRKYQLRHTL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00375 722 PANTHER ACTIN 21 710 IPR004000 -
Spst8g00375 722 MobiDBLite consensus disorder prediction 468 485 - -
Spst8g00375 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Spst8g00375 722 Gene3D - 612 681 - -
Spst8g00375 722 Gene3D - 173 201 - -
Spst8g00375 722 Gene3D Actin; Chain A, domain 4 202 252 - -
Spst8g00375 722 FunFam Actin-related protein 5 170 201 - -
Spst8g00375 722 MobiDBLite consensus disorder prediction 358 378 - -
Spst8g00375 722 Gene3D - 16 169 - -
Spst8g00375 722 Gene3D Actin; Chain A, domain 4 518 611 - -
Spst8g00375 722 MobiDBLite consensus disorder prediction 466 486 - -
Spst8g00375 722 SUPERFAMILY Actin-like ATPase domain 169 715 IPR043129 -
Spst8g00375 722 FunFam Actin-related protein 5 582 611 - -
Spst8g00375 722 Gene3D - 682 710 - -
Spst8g00375 722 Coils Coil 308 328 - -
Spst8g00375 722 FunFam Actin-related protein 5 202 256 - -
Spst8g00375 722 SMART actin_3 19 718 IPR004000 -
Spst8g00375 722 Coils Coil 448 468 - -
Spst8g00375 722 FunFam Putative actin-related protein 5 682 710 - -
Spst8g00375 722 SUPERFAMILY Actin-like ATPase domain 17 157 IPR043129 -
Spst8g00375 722 FunFam Actin-related protein 5 18 169 - -
Spst8g00375 722 Coils Coil 418 444 - -
Spst8g00375 722 Pfam Actin 17 267 IPR004000 -
Spst8g00375 722 Pfam Actin 587 715 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00375 Spst-Chr8 3625497 3631151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00375 588 709 Miscellaneous Gene Families AT2G42100 31.967 8.93e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00375 K11672 - gmx:100804305 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00375 8 3625497 3631151 Spst8g00375 8 3625497 3631151 ECH
Spst8g00375 8 3625497 3631151 Spst8g00375 8 3625497 3631151 PCT