Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00272 ATGGATAAGCTAACCCCAAACCCTGCAAACTCAGTACCCCTCACTCCACTCACCTTCTTGGAAAGGGCAGCAGTCGCCTACGCCGACTCTCGGTCTATCCTGGACGACCAAACTTCCTTCACCTGGTCCCAAACCTACCGTCGATGCCTGCAACTCGCTTCTTCCCTCACTTCTATCGGTTTAGGACGTGGCCAAGTCATCTCTGTTCTCTCCCCCAACACTCCCTCAATGTATGAACTTCAGTTTGCAGTTCCCATGTGTGGCGCCGTTCTCAACAATCTCAACCTCCGTCTCGATCCCCACACGCTCTCCGTGCTCCTGCGTCACAGCGAATCAAAACTTGTCTTCGTTCACTCTCAGTCACTCTCTCTTATTCTCAGTGCTCTTTCCAAATTTCACCAAACCACGCCACGTCCTTCCCTCGTCCTTATCACAGACGACGCGGATGCGGTCGCGGTGGCGCACGCAATCGACACCTATGAGGGCCTTTTGAGCAAAGGTGACCCGAACTTCAACTGGCTCCGGCCCAACTCCGAGTGGGACCCAATAACCCTAAACTACACTTCCGGCACGACGTCGTCTCCCAAGGGCGTGGTACATTCCCACCGGGCAACGTTCATAATGGCCCTCGACTCTCTCATGGACTGGTGCGTACCAAAACAACCGGTTTACTTATGGACACTACCGATGTTCCACTCCAACGGGTGGGGCTTCGTGTGGGGGATTGCAGCCGTTGGCGGCACCAACGTCTGCACGAGTAAAATCAACGCGCCGATCATCTACCGTTCGATCGAGTCTTACAAGGTGACGCACCTGTGCGCCGCGCCGGTGGTTCTCAACATGCTGCTCACGAGAACTGAACCAGTGAAAAACCCGGTTCATGTCCTCACGGGAGGGTCGCCTCCTCCGGCACCAGTTCTCGCGCGTGCAGAGGAGTTAGGGTTTGTGGTGAGCCACGGGTACGGGATGACGGAGACACTGGGGGTGGTGGTGTCGTGCTCGTGGAAGAGGGAGTGGGATAGGCTTCCGGCGATGGAAAGGGCGCGGTTGAGGGCACGGCAGGGGGTGAGGACGGCGGCGGTGGCGGAGATGGACGTGGTGGATCCGGCGAGTGGCGTGAGCGTGAAACGTGACGGGGCTACGTCGGGGGAAGTAGTGGTGCGAGGCCCGTGCGTGATGATGGGTTATCTGAAGGATTCGGAAGGAACAAGAAGGTGCATAAGAGAAAATGGGTGGTTGTACACGGGGGACGTAGGGGTTTTGCATGGGGACGGGTATTTGGAGATAAAGGATAGGTCGAAGGACGTGATAATAAGTGGGGGAGAAAACGTGAGCAGCGTGGAGGTGGAGGCCGTGGTATATGCCCACCCGGCAGTGAGCCATGCGGCGGTGGTGGGGCGGCCGGACGAGTTCTGGGGGGAGACACCATGCGCGTTTGTGGAGCTGAAGGAGGGGTTAGAGCGGCGCCCGACAGAGGAGGAGGTGGTAGGGTTTTGTAGAGAGAGGTTGGCGCACTTCATGGTGCCGAAGACGGTGGTGTTCAAGGAGGCGCTGCCGAAGACGCCGACGGGGAAGATTCTGAAGCACGTGCTGAGGAAGGAAGCGCGCGGTATGGGGTCCTTGGCTATACGCAGTCGCATGTAG 1644 0.5791 MDKLTPNPANSVPLTPLTFLERAAVAYADSRSILDDQTSFTWSQTYRRCLQLASSLTSIGLGRGQVISVLSPNTPSMYELQFAVPMCGAVLNNLNLRLDPHTLSVLLRHSESKLVFVHSQSLSLILSALSKFHQTTPRPSLVLITDDADAVAVAHAIDTYEGLLSKGDPNFNWLRPNSEWDPITLNYTSGTTSSPKGVVHSHRATFIMALDSLMDWCVPKQPVYLWTLPMFHSNGWGFVWGIAAVGGTNVCTSKINAPIIYRSIESYKVTHLCAAPVVLNMLLTRTEPVKNPVHVLTGGSPPPAPVLARAEELGFVVSHGYGMTETLGVVVSCSWKREWDRLPAMERARLRARQGVRTAAVAEMDVVDPASGVSVKRDGATSGEVVVRGPCVMMGYLKDSEGTRRCIRENGWLYTGDVGVLHGDGYLEIKDRSKDVIISGGENVSSVEVEAVVYAHPAVSHAAVVGRPDEFWGETPCAFVELKEGLERRPTEEEVVGFCRERLAHFMVPKTVVFKEALPKTPTGKILKHVLRKEARGMGSLAIRSRM 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00272 547 CDD ttLC_FACS_AEE21_like 12 533 - -
Spst8g00272 547 Gene3D - 3 434 IPR042099 -
Spst8g00272 547 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Spst8g00272 547 Pfam AMP-binding enzyme C-terminal domain 448 525 IPR025110 -
Spst8g00272 547 Pfam AMP-binding enzyme 21 439 IPR000873 -
Spst8g00272 547 FunFam 2,3-dihydroxybenzoate-AMP ligase 434 539 - -
Spst8g00272 547 Gene3D - 435 538 IPR045851 -
Spst8g00272 547 PANTHER ACYL-ACTIVATING ENZYME 1 541 - -
Spst8g00272 547 SUPERFAMILY Acetyl-CoA synthetase-like 10 537 - -
Spst8g00272 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00272 Spst-Chr8 2380581 2382224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00272 1 538 EF-hand Containing Proteins AT1G21540 59.132 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00272 - - gmx:100789991 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00272 8 2380581 2382224 Spst8g00272 8 2380581 2382224 ECH