Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00011 ATGGCACTTCGCAGGCTTTCCTCCACCATTAACAAACCTTTCTCCAATGCCACTTCCATTTATCGCACGTCTTCTTCACTCTCCGCTCACGAAAAAGACAAATCTCGTGCCGATTGGACAAAGCAGCTCAACGATCCTCTCGAGGTCGTGGATCCAGAGATCGCGGACATAATCGAACTCGAGAAAGCGCGCCAATGGAAGGGGTTCGAACTTATACCTTCCGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCGCTTGAAGCTTTTCGGTTGGATCCGGCAAAATGGGGAGTCAATGTGCAATCATTATCCGGATCCCCTTCTAACTTTCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGACATCTATCACATGGTTATCAGACTGATACCAAGAAGATATCAGCTGTCTCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATAGATTATGACCAGTTGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCCAGTGCCTATGCTCGTCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGACAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTATATGATTATGAGGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCATACTATTGCAGGCTTAGCAGTTGCACTGAAGCAGGCCATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGCAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACTTAGTATCTGGTGGAACTGAGAACCATTTAGTGTTGGTGAACTTACGAAACAAGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCAATGGTTCCTGGCGGCATTCGGATGGGAACTCCTGCTCTCACATCAAGGGGATTTGCTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGATGCTGCTGTCAAGTTGGCCTTGCAGATTAAGGAAAATACTAACGGTACAAAGTTGAAGGATTTTGTGGCAGCGATGCAATCAGATGAACAAGTTCAATTGAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGATAGAAACAATGAAGTATGGTAAGTGA 1530 0.4346 MALRRLSSTINKPFSNATSIYRTSSSLSAHEKDKSRADWTKQLNDPLEVVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQAMTPEFKNYQKQVLSNCSAFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFAEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQVQLKIANLRHEVEDYAKQFPTIGFEIETMKYGK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00011 509 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 270 286 IPR019798 GO:0030170
Spst8g00011 509 Coils Coil 474 494 - -
Spst8g00011 509 Pfam Serine hydroxymethyltransferase 47 444 IPR039429 -
Spst8g00011 509 CDD SHMT 50 471 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst8g00011 509 SUPERFAMILY PLP-dependent transferases 35 500 IPR015424 -
Spst8g00011 509 PIRSF SHMT 27 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst8g00011 509 Gene3D - 76 349 IPR015421 GO:0003824
Spst8g00011 509 Hamap Serine hydroxymethyltransferase [glyA]. 46 499 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst8g00011 509 Gene3D Aspartate Aminotransferase, domain 1 51 496 IPR015422 GO:0003824
Spst8g00011 509 FunFam Serine hydroxymethyltransferase 76 349 - -
Spst8g00011 509 FunFam Serine hydroxymethyltransferase 337 497 - -
Spst8g00011 509 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 32 501 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00011 Spst-Chr8 86606 93020 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00011 K00600 - gmx:100816213 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00011 8 86606 93020 Spst8g00011 8 86606 93020 ECH