Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02086 ATGGACGTTGACGGCGACAGTGTGCCACACGATGTTACCAAACAACAGATAAAACAGAAAAAACAGATACAACAGAATCAACAACAAAATAATACAAAAGAATCTGCAGCAAAAAATGAGGAGGAGGAAACACCATTTGTGATAATGGAAAGAGCTGGCATGGTCGACCTTGTGAAAGAGCTTCAAAACATAACAAAAATTGAGTGTATAGCCTTGTCAGTGTTCAATCAACCAAAGGAATCTGCAGCAAAAGAAGAGGAAAAGGAGTCTGCATTTTTGACAGCAGCAAGAAACGGCATTACGGAAATTGTGCATGCACTTCAATTTAAAATACCAAGTGTCGTACATGAAACTAACTCTAAAAATCAAAATGTATTGCTTGTGGCAGCGAAGAATAAGCAAGTAAATGTTGTTCAGTTGTTGCGGAAGAATCTTGAAAAGAACGTCTTTCGTAGCTTAATTTCAGAAATGGATAACAGAGAAAACACAGTGCTACACTTAGCTGCAGGTGCATCGAGCAACGAAACGACTTGGAAGTCACTTGCTACTGTGATGCAAATGATGTGGGATATCAAGTGGTATCAGTACATCAGTGATCTTGTGCCGGAAGAATTCATTTATATACGCAACAAAGATTACAAGACTGCATGGGAAATCTATGAGGCGAAACACAAGGATAAAGCGAAAGAGTGCTCAGAGAACCTAAAGGACTTATCCAATTCTGGCTCAGTTGTGGCGGCTCTCATCGCCGGCGTTTCCTTCGCAACGTCGAGCACCGTTCCCGGGGGCACCGACAAGGGAAAACCTATCTTCGGTGGCCATCCTGCATTTAATGTATTTGCCACTGCTTCCCTGATTGGACTTGTCTTCTCCATCACTGCACTTGTAATGTTCCTCGCCATACTAACTTCTTCAAAACAGGCCCAAGACTTCCGCTTTAGCTTGCCATTGAAGCTTAGTTTCGGCTTAAGTTCTCTTTTTGCATCCGTTGTTGCAATGCTTGTTTCTTTTGGGGCTGCACAGTCCTTTGTGCTTGAAGAAAAGTCCAAGATAATACTCCTCCCTGTTTATGCTACCACTTTGTTGCCTTTGGCTCTCTATGAATGTTTGATAACTCAATCCGGAACAGATGATACAGATATGGATCATAGCTCACTGTTCCGAGAGTGGGTGTTGGAAGGAAAATGGCTGAGCGTTCTTGCTTTATATATAAGCGACAGTGACTGCCACAAAATCAAAATCAACGAGGGAAGAGGCACTGCACTACATGTGGCAGTGAATGATGGGAACGTGAGGTTTGTTAATAATCTTGTTGAAGCAATCTTGAGCCATGAAGGGAGGGAAGGGGTGAGGAGTGATAGTGCACTGAGATCAACCAATGAGAGAGGGGACACTCCTTTGCACCTTGCTGCCTCAAGAGGGTTCATTCCCATGTGTAAGTGCATCATTGGGGAAAATAAGGAAAGGAATGAATTCGGAATGAGAGAGGGGACACTCCTTTGCACCTTGCTTGCAGGCGAAACAGAGACCTTTGTGTACCTTAACAATGTTTCCAAAGAGTTAGATGTTACTCTTAGGAACTATCACGGGGATACCATCCTTCACCAAGCCATTCGGAGAGAATTCTTGGATTTGGCAATTTTAATAACTCATTGTTATCCTGAGCTTGTGGACACAAGAAACGAAGTTGGAGACGCACCTCTCAAAATTCTTGCCAGCAAACCTTCAGCCTTCCAGAGTGGAAGCAATCTCCCATGGTGGAAGCGAATTCTATACTGTTGTATGTATGTCGGACCACTCGATGTTGGAAAGTATGAAGACCCCGAACCCGGTGTGAGTATTGAGTTAGAATCTTATTATGAGGAAGGAAAGCATGCCACTTCTGTTGTTGGGTTTGTAAAGAGTGCAGTAAGATTAGCATTCAAATTCCTTAGCCTCTCAAGATTGGGTGTCACTGCACCAGGTATGTAG 1971 0.4318 MDVDGDSVPHDVTKQQIKQKKQIQQNQQQNNTKESAAKNEEEETPFVIMERAGMVDLVKELQNITKIECIALSVFNQPKESAAKEEEKESAFLTAARNGITEIVHALQFKIPSVVHETNSKNQNVLLVAAKNKQVNVVQLLRKNLEKNVFRSLISEMDNRENTVLHLAAGASSNETTWKSLATVMQMMWDIKWYQYISDLVPEEFIYIRNKDYKTAWEIYEAKHKDKAKECSENLKDLSNSGSVVAALIAGVSFATSSTVPGGTDKGKPIFGGHPAFNVFATASLIGLVFSITALVMFLAILTSSKQAQDFRFSLPLKLSFGLSSLFASVVAMLVSFGAAQSFVLEEKSKIILLPVYATTLLPLALYECLITQSGTDDTDMDHSSLFREWVLEGKWLSVLALYISDSDCHKIKINEGRGTALHVAVNDGNVRFVNNLVEAILSHEGREGVRSDSALRSTNERGDTPLHLAASRGFIPMCKCIIGENKERNEFGMREGTLLCTLLAGETETFVYLNNVSKELDVTLRNYHGDTILHQAIRREFLDLAILITHCYPELVDTRNEVGDAPLKILASKPSAFQSGSNLPWWKRILYCCMYVGPLDVGKYEDPEPGVSIELESYYEEGKHATSVVGFVKSAVRLAFKFLSLSRLGVTAPGM 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02086 656 Gene3D - 35 184 IPR036770 -
Spst6g02086 656 SMART ANK_2a 462 491 IPR002110 GO:0005515
Spst6g02086 656 SMART ANK_2a 87 117 IPR002110 GO:0005515
Spst6g02086 656 SMART ANK_2a 417 446 IPR002110 GO:0005515
Spst6g02086 656 SMART ANK_2a 529 558 IPR002110 GO:0005515
Spst6g02086 656 SMART ANK_2a 121 151 IPR002110 GO:0005515
Spst6g02086 656 MobiDBLite consensus disorder prediction 1 17 - -
Spst6g02086 656 Coils Coil 23 43 - -
Spst6g02086 656 SUPERFAMILY Ankyrin repeat 409 572 IPR036770 -
Spst6g02086 656 Gene3D - 376 578 IPR036770 -
Spst6g02086 656 Pfam Domain of unknown function 233 343 IPR026961 -
Spst6g02086 656 SUPERFAMILY Ankyrin repeat 82 175 IPR036770 -
Spst6g02086 656 MobiDBLite consensus disorder prediction 1 44 - -
Spst6g02086 656 MobiDBLite consensus disorder prediction 18 34 - -
Spst6g02086 656 Pfam Ankyrin repeats (many copies) 420 481 IPR002110 GO:0005515
Spst6g02086 656 PANTHER CASKIN 415 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02086 Spst-Chr6 21689236 21696572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g02086 39 235 Miscellaneous Gene Families AT3G09550 25.316 3.37e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02086 - - pvu:PHAVU_005G119900g 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02086 6 21689236 21696572 Spst6g02086 6 21689236 21696572 ECH