Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02049 ATGGGTTGTAGAAACAGGCACTCTTTCCCAGAGAATCACTCTTCACCTTCTAATGATTCGATCAGCGAGGCCTTGCTTTTAACCACCATGTACATCGTGGGTCTCCCTGTTGATGTTCATGTCAAGGATGGCTCTGTATATTCTGGAATCTTCCACGCTACTTCTACTCAAGCCGATTATGGTATTGTTTTGAAGAAAGCAAGGATGACCAAGAAGGGAAAAGGCAACACCAACATCGGAAATGAGGGCTTTGTGGATACACTAGTGATTCTATCCAGTGATTTTGTGCAAGTTGTTGCCAAGGAAGTAATGCTTCCTGCAGATGGTGTTGTTGAAAACATTACTGGTGATGATGAGGAAGCAGTAGCACATAATGTATGTTCTGAGAGTCTAACATGCGAATTAGAGAATCACACAGAGCCCTTGGTGGATGCAAAACAAGTTAATCAATCTAGACAAGCTGGAGATGAAAAGTCAAACTCAAAAGGAAAAGCTGATGATCACAGACAGAAGTCTGAGTTTCTAAATGAAAAAAGTGATGAAACGATTCAAAGCCACAATTCAAGCCATGAAATTGATACATGTATAGGCCAACAGATAGCTGTTGATCATGGAAGCAAAGATAGGACATCAAATCCTTCTGATGACGGATTATTCTACAACAATGCTCCTGCATCTGTTCAAGCTAATGATCGGTGTAGTGAAAGGTCTGCTTCAGCAGAGTCTGTCTCTACAACTTCAACCCAAGGTGTGGATCTCACCACAGAATCACATCCAGCAAGGTCCATTGAAATATCTGCTCCAAGGGGTAAAGATTCTACAAGAAATGCTAAGCAATTTAAGCTCAATCCAGCTGCCAAAACCTTCTCTCCATCTTTTGTGAATCCTATATCATCAACCTCTGGTGCGAGCATGGTATACATACAAAATAGCTCTCCTGTAGTTCCTGTTGCTAGTATTCAACCAGAAGTTGGATTCAACGCTTTTACTTCTCGGCCTTCAGTACCTGTAAAGGTTGCACAGTATAGTAATTTGACAGTGGGAAATGGTGGAAGTGGCTCTCAGTTTTCTCAACCGATTGTTGGACATGTGCCACATAGAAACCAACCCCTCCGGTATACTACACATTACACCCCTGTTTTGTCTGAACCTGCTTATATACAACCAAGCTCTCCTGCTGTTATGGTTGGACGTTCCCCCCAGTTAGTATATGTTCAGCCAGTTTCCCATGATTTGATTCATGGAACGACGGCTGTTGCCCCAGTCTCAGCTCGCCCTCTTTTGAATCATCATGTACCGTTTCCAAAGCAACAAGGAGGGACAATTGGTCCAGCAATGCCAGTTTGTGTGCCCCCTCCTGTCCTAACAAGTGGACACCAGCCCTTTGCACTTCAAAGCCACATTCCACTTCTGCAACCTGGCTTTCCTCTCACACGACCTATTTCAGTTCCAGGACCAAATGGTTTCTATGGCACTAAATTTTAG 1485 0.4337 MGCRNRHSFPENHSSPSNDSISEALLLTTMYIVGLPVDVHVKDGSVYSGIFHATSTQADYGIVLKKARMTKKGKGNTNIGNEGFVDTLVILSSDFVQVVAKEVMLPADGVVENITGDDEEAVAHNVCSESLTCELENHTEPLVDAKQVNQSRQAGDEKSNSKGKADDHRQKSEFLNEKSDETIQSHNSSHEIDTCIGQQIAVDHGSKDRTSNPSDDGLFYNNAPASVQANDRCSERSASAESVSTTSTQGVDLTTESHPARSIEISAPRGKDSTRNAKQFKLNPAAKTFSPSFVNPISSTSGASMVYIQNSSPVVPVASIQPEVGFNAFTSRPSVPVKVAQYSNLTVGNGGSGSQFSQPIVGHVPHRNQPLRYTTHYTPVLSEPAYIQPSSPAVMVGRSPQLVYVQPVSHDLIHGTTAVAPVSARPLLNHHVPFPKQQGGTIGPAMPVCVPPPVLTSGHQPFALQSHIPLLQPGFPLTRPISVPGPNGFYGTKF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02049 494 MobiDBLite consensus disorder prediction 157 187 - -
Spst6g02049 494 PANTHER ATAXIN 2-RELATED 149 444 IPR045117 GO:0003723
Spst6g02049 494 MobiDBLite consensus disorder prediction 142 189 - -
Spst6g02049 494 Pfam Ataxin 2 SM domain 23 101 IPR025852 -
Spst6g02049 494 MobiDBLite consensus disorder prediction 227 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02049 Spst-Chr6 20719078 20727339 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02049 - - var:108318922 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02049 6 20719078 20727339 Spst6g02049 6 20719078 20727339 ECH