Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g02034 ATGGCGTCGTTTTGCGCGGCGAGGACTTTCCATATTCCGGCGATGAACGGCGGCGTTTTTCGCCGTAGGGCATCGTGGGCCGCCGGAATTGGTGGAGCCACGGTTGCCGGCGTCGCACTCTTGCGTTCGTCTTCGTCTAAGCGCTCTCTGCCATTCGCGTGCAGGAGCCTCTCTACTGATACCAGAATAAAGGAAGCTGTTCAGACTGAAAAGGCCCCAGCGGCATTGGGGCCGTACTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCGGGTGTTCTTGGCCTTGTTCCCGAGACTGGAAAGTTCATCTCTGATAACGTTGAAGATCAGACAGAGCAGCTTCTCAAAAATATGGGGGAGATACTAAAATCTGGGGGTGCTGGCTATTCATCAGTTGTTAAGACAACAATATTGTTGGCTGACTTGAAGGACTTCAAGAAAGTTAATGAGATCTATGCTAAATACTTCCCTTCACCTGCCCCGGCTCGGTCAACGTATCAAGTAGCTGCCTTGCCAATGGATGCCAAGATTGAAATTGAGTGCATAGCATCACTTTGA 564 0.5035 MASFCAARTFHIPAMNGGVFRRRASWAAGIGGATVAGVALLRSSSSKRSLPFACRSLSTDTRIKEAVQTEKAPAALGPYSQAIKANNLLFVSGVLGLVPETGKFISDNVEDQTEQLLKNMGEILKSGGAGYSSVVKTTILLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPMDAKIEIECIASL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g02034 187 Pfam Endoribonuclease L-PSP 70 186 IPR006175 -
Spst6g02034 187 ProSitePatterns Uncharacterized protein family UPF0076 signature. 163 181 IPR019897 -
Spst6g02034 187 FunFam Reactive Intermediate Deaminase A, chloroplastic 61 187 - -
Spst6g02034 187 CDD YjgF_YER057c_UK114_family 79 185 - -
Spst6g02034 187 PANTHER 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA 65 186 IPR006175 -
Spst6g02034 187 NCBIfam Rid family detoxifying hydrolase 64 186 IPR006056 -
Spst6g02034 187 SUPERFAMILY YjgF-like 64 187 IPR035959 -
Spst6g02034 187 Gene3D - 62 187 IPR035959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g02034 Spst-Chr6 20531373 20533820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g02034 K09022 - gmx:100792467 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02034 6 20531373 20533820 Spst6g02034 6 20531373 20533820 ECH