Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01976 ATGGTGACAGAGGAACAAATATCGGAAGCGGTGTCGTCTCTGCTGAGCGAATCGATTCCAAGCCGGCGAAGCTTCACGACGCTGGACCAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCTCTCACAAGCTCGATTTCATCACGTCGCAGATCAGCCTCCTCGTTGGATCCCAACCACAACCACCACAACCTCCGCCACAAAACGCGCAGAGGCAGTTACAGCAGCCGAAAGACCGATTTGCCCCTCCGCCAAACCCTAATTTTCACTCTGTCCCTGTCAGTTCCGGCTTCCAGGCTCCCAAATTCCCTTCTTCTAACGCTGTCGTAGCCACTGCTACTGATACTTCGCGCGTCGAAGCTCCTCCTGTTCCTGCAACTACTACTGCTCCTGCTCCTGCTCCTGCTGCGGCTGCTGTTAAGGAGGTTCCGAAGGAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCGGGAGGTCTCACCAAACTTTGTGGTGTATCGCCTGAACTTCAGGTCATTGTTGGCCAGCCAGCACTGTCGAGGACTGAGATTGTCAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTTCAAGATCCTAGCAACAAAAGGAAAATAATTTGCAACGATGAGCTGCGTGTGGTTTTTGAGACTGATTGTACTGATATGTTCAAGATGAACAAATTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAAAAACCTGTTCCAAAGAAGCAGAAGGTAGATCTGGACTCAGGAAAAAGAAGTGCTGAACCTACACCCTCTGTAATAATATCTGATGCACTTGCTAATTTTTTTGGCATTACTGGAAGGGAGATGCTACAGTCTGAGGTTCTGAGACGTATCTGGGAATACATAAAAGTCAACCAGCTAGAGGATCCTATGAATCCGATGGCAATACTTTGTGATGTGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGGGATACCTGAAGTTCTGGGCCGTCATCATATTTTTAGGAGTTCATGA 1038 0.4855 MVTEEQISEAVSSLLSESIPSRRSFTTLDQVVEELQAKLGHDLSHKLDFITSQISLLVGSQPQPPQPPPQNAQRQLQQPKDRFAPPPNPNFHSVPVSSGFQAPKFPSSNAVVATATDTSRVEAPPVPATTTAPAPAPAAAAVKEVPKESTQTKVKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKKPVPKKQKVDLDSGKRSAEPTPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPMNPMAILCDVKLQEIFGCESISALGIPEVLGRHHIFRSS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01976 345 MobiDBLite consensus disorder prediction 111 163 - -
Spst6g01976 345 SMART swib_2 163 242 IPR019835 -
Spst6g01976 345 SMART swib_2 264 345 IPR019835 -
Spst6g01976 345 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 59 IPR014876 -
Spst6g01976 345 MobiDBLite consensus disorder prediction 245 259 - -
Spst6g01976 345 SUPERFAMILY SWIB/MDM2 domain 156 242 IPR036885 -
Spst6g01976 345 MobiDBLite consensus disorder prediction 245 264 - -
Spst6g01976 345 SUPERFAMILY SWIB/MDM2 domain 259 340 IPR036885 -
Spst6g01976 345 MobiDBLite consensus disorder prediction 58 99 - -
Spst6g01976 345 ProSiteProfiles SWIB/MDM2 domain profile. 263 342 IPR003121 -
Spst6g01976 345 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 266 339 - -
Spst6g01976 345 CDD SWIB-MDM2_like 167 237 - -
Spst6g01976 345 Pfam DEK C terminal domain 2 56 IPR014876 -
Spst6g01976 345 Gene3D SWIB/MDM2 domain 158 246 IPR036885 -
Spst6g01976 345 Gene3D SWIB/MDM2 domain 259 345 IPR036885 -
Spst6g01976 345 Pfam SWIB/MDM2 domain 269 339 IPR003121 -
Spst6g01976 345 Pfam SWIB/MDM2 domain 167 237 IPR003121 -
Spst6g01976 345 CDD SWIB-MDM2_like 268 339 - -
Spst6g01976 345 ProSiteProfiles SWIB/MDM2 domain profile. 162 239 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01976 Spst-Chr6 19339630 19342838 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Spst6g01976 SWIB 5.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01976 - - gmx:100801960 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01976 6 19339630 19342838 Spst6g01976 6 19339630 19342838 ECH