Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01914 ATGGACGAAGGCGAGGGAGGGTACGGTGAGAGCGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCCGTCGCCGACGATGGTTTCATGGCCGAGGAAGACGACGATTATGAGGATCTTTACAACGACGTCAACGTCGGCGAAGGATTCCTTCAATCTTTGCGCAAAAACGACGATTCAGGGTTTCGTAACGAAGATGTCGAGGACAAGAAGCCGTTACCGCCGCCACCGGTTCCAGATGCCGCCGGGGTTTCGATTCCCGGTGTCGGTGGCGGTGGAGAGGGTGGCGGCGGTGTTGGAAGTGGGGTTGTGGAATCTAGGGTTTCCGCAAGAGTTGACGGGTTCCAGAATCAAGGGTTTAGAGGGAACGATGTGGGTGCCAAAAGTGGGATTAGGGTTGAATTAGGACACCAATCTGGTAAATCGAGTGAAATTGAGGAACATGGTGGTAATGATGATGCTCCAGTGCAGGGGATTGGACAACAACCTCATGCTGGTGTTGTTGGGAGTGTGGGAAATGAGGGTATGGTCAGACAAGGTCAAGTTGGTGGTAGTGGTGGAGGAGGGAATGCTAATAGGGTTGGTGGAAACGGTGTTGGAAACAGTGTGGGTGCTGTTAATAGTGTTATTACTGGAGGAGTTGGAGTTGGAGGAGGAGGTGGTGGTGGTGGTGGTTCTGGTGGTACTATTTTGTTTGTGGGCGATTTGCATTGGTGGACTACTGATGCTGAGCTAGAAACTGAGCTTAGTAAATATGGGCCTGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCGAGTGGGAAGTCAAAGGGGTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCTGCCACAAGTTGCAAGGAGGGAATGAATGGTCATGTTTTTAACGGGAGGCCATGTGTTGTTGCGTTTGCCTCGCCTTTTACAGTTAAGAAAATGGGAGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTGCAGTTACACAACAGGGAAGGAGGGGGCCTGCTGATGGAGGCTCTAAGCCTGGTGGGAGTAATATTTCGACACATGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGGGGTAACTGGGGAAGAGGGAATAATCCTGGTATGGGGAATAGGGGGCCTGTGAATGCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCATGGTGGAAATGGTTTTGGACAGGGTATTGGTGGTACCCCTCCACTGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCTTTTGTTGGTCCAATGGGTAGAATGGGTAGCTACGGAGGTTTTCCTGGTGCTCCAACACCTCCATTTTCTGGGATACTACCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTTTTCGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCAACATCAGGCATGGATGGTCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCAGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGACGATAGAGATCAAGGATATGAAAGAGATGCACCTAGAGAGAAAGATATGGGCCATGATGCTGAGTGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACGGGCCGAGAACGATCTCGGGACCGTGAACATGAAAGATCCCGTGATCGAGATCGTGAAAGATCCCGAGACCGTGATCGTGATCGTGAAAGGGATCACCGAGAGCGTGACAGGCACAGAGAAGATAGGGACAGGTATGGCGATCATCATAGGTATAGGGACGGGGAAGGAGAGCATGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAATCACGGTTATCACAGGAGGAGGAACACCACTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGACGGCTTACTTCAGAATAA 2124 0.5042 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFMAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNEDVEDKKPLPPPPVPDAAGVSIPGVGGGGEGGGGVGSGVVESRVSARVDGFQNQGFRGNDVGAKSGIRVELGHQSGKSSEIEEHGGNDDAPVQGIGQQPHAGVVGSVGNEGMVRQGQVGGSGGGGNANRVGGNGVGNSVGAVNSVITGGVGVGGGGGGGGGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATSCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPADGGSKPGGSNISTHGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNAMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLLHPQSMMNQGFDPAFVGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDAEWSERRHRDDRETGRERSRDREHERSRDRDRERSRDRDRDRERDHRERDRHREDRDRYGDHHRYRDGEGEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01914 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Spst6g01914 707 MobiDBLite consensus disorder prediction 139 198 - -
Spst6g01914 707 MobiDBLite consensus disorder prediction 322 419 - -
Spst6g01914 707 MobiDBLite consensus disorder prediction 539 707 - -
Spst6g01914 707 CDD RRM_CFIm68_CFIm59 234 307 - -
Spst6g01914 707 SMART rrm1_1 233 306 IPR000504 GO:0003723
Spst6g01914 707 MobiDBLite consensus disorder prediction 1 24 - -
Spst6g01914 707 MobiDBLite consensus disorder prediction 61 76 - -
Spst6g01914 707 Gene3D - 227 371 IPR012677 -
Spst6g01914 707 SUPERFAMILY RNA-binding domain, RBD 222 317 IPR035979 GO:0003676
Spst6g01914 707 MobiDBLite consensus disorder prediction 55 105 - -
Spst6g01914 707 MobiDBLite consensus disorder prediction 501 707 - -
Spst6g01914 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 303 IPR000504 GO:0003723
Spst6g01914 707 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 643 IPR034772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01914 Spst-Chr6 18361888 18364011 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01914 K14398 - gmx:100782869 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01914 6 18361888 18364011 Spst6g01914 6 18361888 18364011 ECH