Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01908 ATGCATCACCACTTCCGTCCGGCGACACTGCCGGCGCTCGCCGCGGCGATCTTCCTCCTCGCCACCCTCTCCCACGCGCACAACATATCTCGCATCCTCGCTCAACACCCAGAGTTCTCCACCTTTAATCACTACCTCACTCTCACGCACCTTGCGCCCGAAATCAACGGCAGAACCACTATCACTGTCTGCGCCGTCGACAACGCCGCCATGGCCGACCTCCTCGCGAAGCACCCCTCCATCTATACCGTCAAGAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCCCTCGCCGCCACCATGTACCAGGCCAGCGGCACCGCCCCGGGCTCCTCCGGTTTCGTCAACATCACCGACCTTCACGGCGGCAAAGTCGCATTCGGCGCGGAAAACAACGATGGAACCCTAACTTCCACCTTTGTCAAATCCATCGAAGAAATCCCTTACAACATTTCCGTTATCCAGATCAGCAAAATTCTCCCCTCGGCAGCAGCGGAAGCCCCTGCACCCGCACCCGCTCAGCAAAACCTCACCAGCATTATGTCCAAACACGGTTGCAAAGTCTTCGCCGACACGCTTTCTTCCTTTAAAGACGCGCTTTCCACCTTCAACGACAACCTCGACGGTGGATTGACCGTTTTTTGCCCCCTCGACGACGCCTTCAAAGCTTTCCTCCCCAAATTCAAAAACCTAACCGCTTCTGGCAAACTCTCACTTCTTGAATTCCACGGCGTGCCGGTGTACCAATCCCTTGCCACGCTAAAATCGAACAACGGACTTCAGAACACCTTGGCCACCGACGGCGCTAACAATTTCGACTTCACTGTGCAAAATGACGGCGAACAGGTCACTCTCAAGACGAGACTCACCACGGCCAAGATCACCGACACGTTAATCGATGAACAGCCTCTCGCTATTTTCGCTATAGATAAGGTGCTTCAGCCGAAGGAGTTGTTCAAGGGTGAGGCACCGGCTCCGGCGCCCGCACCGGAGCCGGCTGCCGCTGACGCTCCCGCCCCGGCGAAGAAGGGGAAGAAGAAGAAGAAGGCTGCTGACGCTCCTGCCGCGGATGGGAATTCCGACGCGCCAGCGGACTCCCCCGGGGACGCCGCCGATGACACCGCCGACGATAGTAACGGCGCCGTTAGACCCGATGGCGGGAGGTATGGTAAGGTTGTCGTTGCCTTGGGTTTGGTATTTGGTTTACCGTTAGTGCTGTGA 1263 0.5772 MHHHFRPATLPALAAAIFLLATLSHAHNISRILAQHPEFSTFNHYLTLTHLAPEINGRTTITVCAVDNAAMADLLAKHPSIYTVKNILSLHVLLDYFGAKKLHQITNGTALAATMYQASGTAPGSSGFVNITDLHGGKVAFGAENNDGTLTSTFVKSIEEIPYNISVIQISKILPSAAAEAPAPAPAQQNLTSIMSKHGCKVFADTLSSFKDALSTFNDNLDGGLTVFCPLDDAFKAFLPKFKNLTASGKLSLLEFHGVPVYQSLATLKSNNGLQNTLATDGANNFDFTVQNDGEQVTLKTRLTTAKITDTLIDEQPLAIFAIDKVLQPKELFKGEAPAPAPAPEPAAADAPAPAKKGKKKKKAADAPAADGNSDAPADSPGDAADDTADDSNGAVRPDGGRYGKVVVALGLVFGLPLVL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01908 420 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Spst6g01908 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10 393 IPR033254 -
Spst6g01908 420 Gene3D FAS1 domain 25 172 IPR036378 -
Spst6g01908 420 FunFam Fasciclin-like arabinogalactan protein 10 180 330 - -
Spst6g01908 420 Pfam Fasciclin domain 37 113 IPR000782 -
Spst6g01908 420 Pfam Fasciclin domain 205 329 IPR000782 -
Spst6g01908 420 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Spst6g01908 420 SMART fasc_3 62 177 IPR000782 -
Spst6g01908 420 SMART fasc_3 226 330 IPR000782 -
Spst6g01908 420 Gene3D FAS1 domain 173 330 IPR036378 -
Spst6g01908 420 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Spst6g01908 420 FunFam Fasciclin-like arabinogalactan protein 2 25 167 - -
Spst6g01908 420 SUPERFAMILY FAS1 domain 183 330 IPR036378 -
Spst6g01908 420 MobiDBLite consensus disorder prediction 335 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01908 Spst-Chr6 18221272 18222534 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01908 - - gmx:100810878 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01908 6 18221272 18222534 Spst6g01908 6 18221272 18222534 ECH