Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01903 ATGAAACTACACAAACTTCCCTCTCCGTCACTCGCACGTGCGCTCGCACGTGCCATATGCTCCGCCACCACCACGCAATGTGTTTCGGCGTTTCCTTCGAAGACGGTAACCACCGCGAACTTCGAGCCGTCGCTGGCGGAGCTCCGGCGCCACGTCCGGTCGTCGGACTTCGTGGCCATCGACCTCGAGATGAGCGGCGTCACCAGCGCTCCCTGGCGCGAGTCCCTCGACTTCGACCGCTCCGACGTGCGCTACCTCAAGGTCCGAGACTCCGCTACCAAGTTTGCCATCCTTCAATTCGGCGTTTGCCCCTTCCGTTGGGATTCCTCTAACCACTCCTTCGTCGCGTATCCGCACAATTTCTATATTTTTCCTCGACAGGAGCTTGCAGGTCTGGGACCATGTGATGAATTTCTCTGCCAGACCACTTCAATGGATTTCTTGGCTAAATACCATTTTGATTTTAATGCTTGCATACACGAAGGAATATCTTATTTATCCAGAGAACAAGAAACGAAAGCATTAAGGAGTTTGAATTCTACATATGATAAGGCGTGGTTGGACATTTGTAAATTAAAAGATGTTAGGGATTTGCCGCAGCTCAGCACAGCAGACATTTTGTTCTCTGAACGAATGAAAAACAAATTCAGTGAATGGCGTGATGGGTTATTACACGAGCAAAATCAAGAAGACCAAAGCCAAGGAATTACAGAAGACTCCAAATTTCAAGTGATTTTTTTTGAGATGCATCCAGCTCTTAGGCTTAATGGATTCACCCCTCACCAGCTTAAATTGATTCAGTTGGTCATCAGAAAACACTTCAAAGATCTTTCTTATGTCAGTGTCAACTGTGAGGCTTCTGGTTCACAGCAATTAGTTGTGTATACTGACTCAAAGGATGAATTAAACTTGCTTCTGAAAAAAGTGAAAGAAGAAAATCACAGGGCAGAAAAGATGAAAATCCAAGCTGCTGTGGGGTTTCGCCATGTTATTGATCTCCTTTCATCGGAACAGAAGTTGATTGTTGGGCACAATTGTTTTCTAGATATAGCTCATGTCCACAGCAAATTTATAGGCCCTCTTCCTGGTACTCCTGAAGAATTTGTTTCCACTGTTAACAAGTGCTTTCCGCACATTGTTGACACCAAGATACTCCTGAACACTAATTTTATGCTCCAGGAAAAGATGAAAAGATCCAGAAAATCACTGGCAGATGCATTCACTTCATTTTGCCCACAAATTGCAGCTGGCTCCAGAAGCAATGATCTAGGTTCACTTTCACATGTGAAAGTGGATGTTGAAGTTGATGATGCGAGATCATCCAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGATATGATGCCTTCATGACTGGATGCATCTTTGCCCAGTTATGTAGTGATTTAGGTATCGATTATAAACTCCACGATTCTTCAAAACAATTAGCCCTTGATGAGATACTGCAGAAGTACGGTAATCGTCTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAAACACTGGTAATAAGGTTGCAGATTCTTCACCCAGCCATAGTCTCAAGAAGCGGTACCCAAAATTTTTGTTTGATAACATTGTCATTATTTGGGGATTTCCTTCTACGCTGAAGGCAAATGAAATAAGAAACTGCATATCTAAAGTATTTGGTCCAACTTCTATAGTTTCTGTCTTCCACTTGGATGCAACTGCAGTATTCGTCCAGTTTAGCAAAACCGAACTAGTTTCTGATTTTCTTTCATTGAAGAACACCTTAGAGAGAAGTGATGGTACTATCTTGGTTTTGCATCCACTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCTAATTATGATACTTATAAAGAAATTTGTGGTTCACCCTTATCAGAAGGTCTGTTTGCTGATCAGGCAAAGGCAGTTGGTATAAAGTGGAAGACCAAATTGACAGAATACAAGGTAGCATTGGGAGCCGAGGAACATGAAAATCCAAGTGTACAAGGTCATGTAAATACTGCTATGAAGAATGTAGAAAGCACCATGTCAAACACTGATCTATTGGGAAAGGCTCCCTCTGGGGGACAAGTCTCCACATTTGAGATTGAAGATTCTTCTTGTGTTGCAGAAGCCAACTTGTGA 2145 0.4317 MKLHKLPSPSLARALARAICSATTTQCVSAFPSKTVTTANFEPSLAELRRHVRSSDFVAIDLEMSGVTSAPWRESLDFDRSDVRYLKVRDSATKFAILQFGVCPFRWDSSNHSFVAYPHNFYIFPRQELAGLGPCDEFLCQTTSMDFLAKYHFDFNACIHEGISYLSREQETKALRSLNSTYDKAWLDICKLKDVRDLPQLSTADILFSERMKNKFSEWRDGLLHEQNQEDQSQGITEDSKFQVIFFEMHPALRLNGFTPHQLKLIQLVIRKHFKDLSYVSVNCEASGSQQLVVYTDSKDELNLLLKKVKEENHRAEKMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVHSKFIGPLPGTPEEFVSTVNKCFPHIVDTKILLNTNFMLQEKMKRSRKSLADAFTSFCPQIAAGSRSNDLGSLSHVKVDVEVDDARSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDYKLHDSSKQLALDEILQKYGNRLYLSWMHGDIIDLNTGNKVADSSPSHSLKKRYPKFLFDNIVIIWGFPSTLKANEIRNCISKVFGPTSIVSVFHLDATAVFVQFSKTELVSDFLSLKNTLERSDGTILVLHPLSKLLEGGNTCAANYDTYKEICGSPLSEGLFADQAKAVGIKWKTKLTEYKVALGAEEHENPSVQGHVNTAMKNVESTMSNTDLLGKAPSGGQVSTFEIEDSSCVAEANL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01903 714 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 36 628 - -
Spst6g01903 714 Pfam CAF1 family ribonuclease 36 462 IPR006941 -
Spst6g01903 714 Gene3D - 295 511 IPR036397 GO:0003676
Spst6g01903 714 Gene3D - 35 201 IPR036397 GO:0003676
Spst6g01903 714 Coils Coil 299 322 - -
Spst6g01903 714 SUPERFAMILY Ribonuclease H-like 29 469 IPR012337 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01903 K01148 - gmx:100784997 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01903 6 18170155 18175335 Spst6g01903 6 18170155 18175335 ECH