Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01551 ATGGCCGACAAGTACAACCTCAAGAACCCAGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCATTCCAACCCCTCCGACGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGGCCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGCTGCCTTCAGAGTATCCATTCAAACCCCCTTCGTTTATGTTGTTGACACCTAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTCTAGTGGCACTGATTGCATTCATGCCAACCAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGAAGAGAGGCGTACCCTAGCCGTTAAATCTCGTGAAGCTCCTCCTAAATTCGGCACTCCTGAACGTCAAAAGCTGATCGATGAGATACACGAGTACATGCTATGCAAGGCACCCCCAGTTCCTCAACCAGGCGCCATAGAAGCTTCCGAAGAGCACCCCAGAAATGAGGAGGCTGAGGCCTTGGTTGATTCACCTAATCCTGAGTCTTTACCAGCTGGAGAGAGGATTCCGGATCAAGAAGGTGATGAAATTGTTGAAGAACAACAAGAAGTCCCTGCAGATGCTAACCTTGCTGGAGTAGAAGTTTCGAGGGAGATTCCATCAAATGCTTCAAAGAATGTGTTACCCCAAAAGTCAGATACACCTGCAAGGGTTCACAATCCCAAGCCAGAGACAAGGGTCCAGAAACCTGATGATCGGTTGTTCACATTGGCCGCTATCGGACTCACTATCGCTATTGTGGTCCTTTTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCCGATGGATCTTGA 933 0.4759 MADKYNLKNPAVKRILQEVKEMHSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAVKSREAPPKFGTPERQKLIDEIHEYMLCKAPPVPQPGAIEASEEHPRNEEAEALVDSPNPESLPAGERIPDQEGDEIVEEQQEVPADANLAGVEVSREIPSNASKNVLPQKSDTPARVHNPKPETRVQKPDDRLFTLAAIGLTIAIVVLLLKKFIKSTEHGALFSDGS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01551 310 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Spst6g01551 310 SUPERFAMILY UBC-like 11 133 IPR016135 -
Spst6g01551 310 FunFam ubiquitin-conjugating enzyme E2 32 1 174 - -
Spst6g01551 310 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 129 - -
Spst6g01551 310 Gene3D Ubiquitin Conjugating Enzyme 2 169 IPR016135 -
Spst6g01551 310 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Spst6g01551 310 CDD UBCc 12 127 IPR000608 -
Spst6g01551 310 SMART ubc_7 13 173 - -
Spst6g01551 310 MobiDBLite consensus disorder prediction 240 269 - -
Spst6g01551 310 MobiDBLite consensus disorder prediction 241 255 - -
Spst6g01551 310 MobiDBLite consensus disorder prediction 172 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01551 Spst-Chr6 14548005 14551694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01551 1 308 Miscellaneous Gene Families AT3G17000 62.654 6.20e-133 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01551 K10578 - gmx:100811370 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01551 6 14548005 14551694 Spst6g01551 6 14548005 14551694 ECH