Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01517 ATGCTGCCATTGAACGCGAGGATAGCAGGTTTGAAGAGTGAGCGTGAACAGCAAAAGAAAAGCAAGAAGACAGATAGAAGAAGCAATTTCGGGAAGAGGTTTTTGCCATCTTGCATGGGATTTCAATCTCCAACTTCTCGCCCTACCCGAAGTGACGCCGTTTTGAACCACCATCCACCATTTCCGATCATTCACCAGTTTCTGCTGCCGCCGCCGCTGCCGCCACCGTCTACGGTTCTGCTTCCGATACCTTTCAACCCCTCACTTTTCTTCATGATGGACAATCAAAGGTCCATTTCTCTGCTTCAGATAGTCTCATCGTGGATCAAGAAGGTTGCATGCCTGCATCAACTACCAGAGCACCAAATTGCTGTCACATCTGCCACAATATTGACTTATGGATCTTATGGCCTCGGAGTTCACAGCTCAGGGTCTGACATTGATGCTTTGTGTGTTGCTCCTTTCTTTGCCTCAATTGCAAATGACTTTTTTGTTGTGTTGTACGACATGCTTAGAAGGAGACCCGAAGTATCGTATATTCACTGTGTCAAGAGTGCAAAAGTCCCTTTAATGCGATTTACATTTGAAGGGGTTTCCATTGATCTTCCGTACGCTCGGCTTAATGTACTATATGTTCCTGAGAATGTTGACATATTAAATCCATTTTTCATGAGGAATATTGATGATACCAGCTGGAAAAGCTTGTCCGGGGTACGGGCAAATAAATACATTCTTCATCTACTTCCTAATATAGAGAAATTTCAATGCATGCTACGATGTCTTAAACTATGGGCAAAAAGACGAGGAGTTTATGGAACTTTGCTCGGTTATTTGGGAGGAGTTCATATGACAATTCTTGCAGCATATGTTTGTCTAAGACACCCAGACGCCACCTTAAATGCTCTAATTATCAACTTTTTTCAAACATTTGCATTTTGGCCCTGGCCTTCTCCAGTGATGTTGCAGGAAGGAATGTTGTTAACAGTCGTAAATGCGATAGAAACACGGTCCTTCATGCCTATATTTCTGCCATCTAGCTGTTATGAGTACTGTCATACAAATATTACTAAAAGCACTTTCTTTCGGATCAGGACTGAGTTTCTTCGTGGACATGAGATGACAAAGGATCTTTTGAAGCCAGATTTCATTTGGGATAATGTATTTGAGCCTTTTCCATACTCAAAAAGATACTCCCAATTTCTGAAGATATGTCTCACTTCTCCTAACCATTATGCACTGATTGAATGGGTTGGTTGGGTAAAGTCACGCTTTCGAGGTCTTCTTCTACATCTGGAGGTTATTCAAGGATTTTGTGACCCTAATCCCACAGAATATGTTGATAGTGAGAAAGCAGAACCAAACGTAGTTTTCTACTGGGGTTTGCAGCCAAGTAACAATAATATCCTGGACATTGATTCGGTCAAGGGGGAGTTCATGAAGATTATCAAGAATGGCTATGAAGTTGTGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGAATCAATCATCACCTGTGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGATCTTAGAGTGTCTAAGGTTGTGCCAGGAGGGTCTCTTAATGCCTTCCTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGATAAAGAAGAAGGGGGAATAA 1728 0.4311 MLPLNARIAGLKSEREQQKKSKKTDRRSNFGKRFLPSCMGFQSPTSRPTRSDAVLNHHPPFPIIHQFLLPPPLPPPSTVLLPIPFNPSLFFMMDNQRSISLLQIVSSWIKKVACLHQLPEHQIAVTSATILTYGSYGLGVHSSGSDIDALCVAPFFASIANDFFVVLYDMLRRRPEVSYIHCVKSAKVPLMRFTFEGVSIDLPYARLNVLYVPENVDILNPFFMRNIDDTSWKSLSGVRANKYILHLLPNIEKFQCMLRCLKLWAKRRGVYGTLLGYLGGVHMTILAAYVCLRHPDATLNALIINFFQTFAFWPWPSPVMLQEGMLLTVVNAIETRSFMPIFLPSSCYEYCHTNITKSTFFRIRTEFLRGHEMTKDLLKPDFIWDNVFEPFPYSKRYSQFLKICLTSPNHYALIEWVGWVKSRFRGLLLHLEVIQGFCDPNPTEYVDSEKAEPNVVFYWGLQPSNNNILDIDSVKGEFMKIIKNGYEVVDPWRNGSASDSRSEGCVFDSRRNQSSPVDPWRNGSASDSRSEGCVFDSRRDLRVSKVVPGGSLNAFLFLLIGVISQRLAMIKKKGE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01517 575 Gene3D Beta Polymerase, domain 2 101 242 IPR043519 -
Spst6g01517 575 MobiDBLite consensus disorder prediction 499 532 - -
Spst6g01517 575 Pfam Poly(A) polymerase central domain 101 390 IPR007012 GO:0043631|GO:1990817
Spst6g01517 575 MobiDBLite consensus disorder prediction 12 30 - -
Spst6g01517 575 FunFam Poly(A) polymerase alpha, putative 96 242 - -
Spst6g01517 575 CDD NT_PAP_TUTase 128 208 - -
Spst6g01517 575 PANTHER POLY A POLYMERASE 101 484 - -
Spst6g01517 575 Gene3D Poly(A) polymerase predicted RNA binding domain 393 497 - -
Spst6g01517 575 SUPERFAMILY PAP/OAS1 substrate-binding domain 249 390 - -
Spst6g01517 575 MobiDBLite consensus disorder prediction 9 33 - -
Spst6g01517 575 Gene3D - 243 388 - -
Spst6g01517 575 MobiDBLite consensus disorder prediction 499 531 - -
Spst6g01517 575 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 391 494 IPR011068 GO:0003723|GO:0016779|GO:0031123
Spst6g01517 575 SUPERFAMILY Nucleotidyltransferase 99 245 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01517 Spst-Chr6 14231511 14238641 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01517 K14376 - qsa:O6P43_003700 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01517 6 14231511 14238641 Spst6g01517 6 14231511 14238641 ECH