LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g01332	ATGAACAAGTGTGATCATCCCTTTGACGAAGACAAGGGTTCTGCAGAACGGATGTCAAACTCAGGGAGGGCAATACCTATTGAAACTCAAATGTTGCTCTTGGAAGCAAGAGACGGAATGGATTCACAATCATCCAAGGAAATTCATTTTAATGAACTTGAGCTTTGTGTTGAAAGTGGAAAATGGATGGCTGGTCTTGTCAGAGCACAGTGGTCAGTCGCAACCTTAAATCTTATGCCAGGAATGTTAGATTGCTTTGGTTGGTGCACTTGGGATGCTTTTTATCACTTTGTTAATCCTCAGGGAATCAGGGATGGACTTAAGAGGTTATCTGAAGTAGGCACACCAGCAAAATTCTTGATAACAGATGATGGATGGCAAATGAGTTTCAAAAGATTCGATGGAAGATTAATCAGCATCAAAGAAAATAATAAATTCCGAGCAGTAGGAGATGTAACTGAAAATGAGGTGCCGGTTAGTCTAAAGGACTTTGTTTCAGAAATCAAGAGCAATTTTGGTCTCAAGTATGTCTACGTATGGCATGCCCTACTGGGTTACTGGGGAGGGTTAGATCCAAATGCATCTGGAACCAAGAAGTATGATCCAAAACTTAGATACCCAGTACAGTCACCAGGGAATTTAGCAAATACAAGGGATTTATCTATTGATGCCATGGAGAAGTATGGCATTGGTATCATTGATTCAGCTAAAATTTCAGAGTTTTATGATGATCTACACAATCTCCACAATGCAGCTGAGTTCCATGCAGTAGCTAGAGCAGTTGGAGGCTGCGGAGTACATTGTGACAAACCTGGCCAACATGATTTCAAAGTATTGAAAAAGCTTGTACTTCCTGATGGATCAGTTCTCAGATCCAGATATCCTGGAAGACCATCGCGTGATTGCTTATTCATTGATCCAGTTACGAATAAGAAGAGCCTTCTCAAGATTTGGAACTTGAACAAATGTGGGGGAGTTATAGGCATCTTTAATTGCCAAGGAGCAGGTTCCTGGCCTGGTCTTGAAAGTAATGCTGAGGAAGACATTATTTTTGAGCTATCCGATTTCAATTTACAATCAAACAATCCAGTTTGCACCAATAGGACTAACAATATGTATAACTCTGGTGGAGCTGTTGAAGCAGTTGACTCCAGTGATTCTTCTGGATCTAAAATACATGTAAGGGGTAGAGGAGGAGGTGGCTTTGGAGCTTACTCCAACTTAAAACCAAAGTCTTCATTTGTAAATTCTGAAGATTTGGAGTTCAAATTTAGAGAGGAAGATAATTTTTTTGGAGTAACAATTTCATGGGACATCACCATCTGCAACTGA	1332	0.4024	MNKCDHPFDEDKGSAERMSNSGRAIPIETQMLLLEARDGMDSQSSKEIHFNELELCVESGKWMAGLVRAQWSVATLNLMPGMLDCFGWCTWDAFYHFVNPQGIRDGLKRLSEVGTPAKFLITDDGWQMSFKRFDGRLISIKENNKFRAVGDVTENEVPVSLKDFVSEIKSNFGLKYVYVWHALLGYWGGLDPNASGTKKYDPKLRYPVQSPGNLANTRDLSIDAMEKYGIGIIDSAKISEFYDDLHNLHNAAEFHAVARAVGGCGVHCDKPGQHDFKVLKKLVLPDGSVLRSRYPGRPSRDCLFIDPVTNKKSLLKIWNLNKCGGVIGIFNCQGAGSWPGLESNAEEDIIFELSDFNLQSNNPVCTNRTNNMYNSGGAVEAVDSSDSSGSKIHVRGRGGGGFGAYSNLKPKSSFVNSEDLEFKFREEDNFFGVTISWDITICN	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g01332	443	Pfam	Raffinose synthase or seed imbibition protein Sip1	371	429	IPR008811	-
	Spst6g01332	443	Pfam	Raffinose synthase or seed imbibition protein Sip1	79	247	IPR008811	-
	Spst6g01332	443	SUPERFAMILY	(Trans)glycosidases	82	264	IPR017853	-
	Spst6g01332	443	PANTHER	-	371	438	IPR008811	-
	Spst6g01332	443	MobiDBLite	consensus disorder prediction	1	20	-	-
	Spst6g01332	443	Gene3D	Aldolase class I	75	182	IPR013785	-
	Spst6g01332	443	MobiDBLite	consensus disorder prediction	1	17	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g01332	Spst-Chr6	12273413	12279071	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g01332	242	307	Glycoside Hydrolase	AT3G57520	65.672	8.81e-24	102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g01332	-		-	gmx:100819413	337.421

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst6g01332	6	12273413	12279071	Spst6g01332	6	12273413	12279071	ECH