Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01317 ATGGGCCTTGTTGTTTCTGAGGATGCCCTCACCAAACTCCGAGCTCTCATGGATCAAGTCGAGGAGGAGCCACTGCTGAGAACTTTTCAGAATGTTCATCAAGGATGTGTCACCGAAACCTTAATGCGATTTCTAAAAGCAAGGGAGTGGAATGCTACCAAGGCACACAAAATGCTAGTTGATTGTTTAAATTGGAGAGTGCAAAATGAGATTGACAACATATTATCCAAACCAATAATCCCTGCTGATTTATACCGAGGCATTCGTGATTCGCAACTTATAGGTTTGTCAGGGTACTCAAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACTTTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCATATTCAAATTAATGAATATCGTGATCGTGTAATCTTGCCTTCTGCATCAAAGAAGCATGGGAAGCCTATTACCACATGTGTGAAAGTTTTGGATATGACTGGTCTGAAGTTATCAGCCCTGAATCAGATCAAGTTGTTAACAATAATATCATCCATTGATGATCTGAACTACCCGGAGAAAACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTCTACAAGAGAGGACAAGAAGAAAAGTGCAAGTCTTGCCAGGTTGTGGGCGAGATGAACTGTTGAAGATCATGGATTATGCATCGCTGCCACATTTCTGTAGAAGAGAAGGCTCTGGGTCATCCAGACATTCAGAGAATGAAAATAGTTATTCCTTAGATCATCCTTTCCATCAGAAGCTCTACAATCACATAAAGGAGCAATCCAGAATTCATGAAGCTGTTGAACCCATCAAGCAGGGATCATTCCATGTAGATTTTCCTGAACCTCCTGCTGAGAAAGCTGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCAGCAATGGGAATAGCGATTGA 981 0.4108 MGLVVSEDALTKLRALMDQVEEEPLLRTFQNVHQGCVTETLMRFLKAREWNATKAHKMLVDCLNWRVQNEIDNILSKPIIPADLYRGIRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGKPITTCVKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKIMDYASLPHFCRREGSGSSRHSENENSYSLDHPFHQKLYNHIKEQSRIHEAVEPIKQGSFHVDFPEPPAEKAEIVKTLESELHKFKISNGNSD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01317 326 SUPERFAMILY CRAL/TRIO N-terminal domain 9 78 IPR036273 -
Spst6g01317 326 Pfam CRAL/TRIO domain 92 243 IPR001251 -
Spst6g01317 326 Pfam CRAL/TRIO, N-terminal domain 11 61 IPR011074 -
Spst6g01317 326 CDD SEC14 85 243 IPR001251 -
Spst6g01317 326 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 241 IPR001251 -
Spst6g01317 326 SMART CRAL_TRIO_N_2 37 62 IPR011074 -
Spst6g01317 326 Coils Coil 3 23 - -
Spst6g01317 326 SUPERFAMILY CRAL/TRIO domain 83 277 IPR036865 -
Spst6g01317 326 SMART sec14_4 80 249 IPR001251 -
Spst6g01317 326 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 3 324 - -
Spst6g01317 326 Gene3D - 5 289 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01317 Spst-Chr6 12170764 12174940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01317 1 323 Acyl Lipid Metabolism Gene Families AT5G47730 73.994 3.22e-179 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01317 K26544 - gmx:100793867 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01317 6 12170764 12174940 Spst6g01317 6 12170764 12174940 ECH
Spst3g03330 3 83122659 83126456 Spst6g01317 6 12170764 12174940 PCT