Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01241 ATGAAGACCGGATCGCGTTCCAAAGAGGAAACAAAGACGTATCAGGAATGGTTCAATTTGGCCGATTCAGACGGAGATGGACGAATCTCTGGGAACGAGGCCACTAAGTTCTTCGCTCTCTCCAACTTGTCGCGCTCGCAACTCAAACAGCTTTGGAATCTCGCCGATGTCAAACGACAAGGGTTTTTGGGCTTCCCAGAGTTCGTTACTGCAATGCAGTTGGTTTCGCTCGCGCAAGCAGGGCAAGAACTTAACTCAGATATTCTCAAAACGCAAATTGATAAAGAAAATATTGAACCTCCGACATTGGAAGGACTTGATGCTTTAGTAGCACAAAAGAGTTTAACAATTACTACCGCGCCCGAAGTAAACGGGATTGCTCAGCCTCAACTGTTTGCAACTAATCGGTGGTTTAGTTCAAAATCTTCAAAGAAATTACCTCTCAATTCAGTTACGTCAATCATTGATGGCTTGAAGAGATTGTATATCGAGAGGTTAAAGCCGTTAGAAGTTACTTATCGATATAATGATTTTGTATCTCCATTGTTGACCAACACTGATTTTGATGCTAAACCCATGGTCATGCTTCTTGGTCAATATTCAACAGGAAAAACTACGTTTATAAAACATTTGTTAAGATGTGATTATCCAGGAGCACATGTTGGACCAGAGCCTACCACTGATATATTTGTTGTTGTCATGTCTGGACCGGATGAGAGGAGTATTCCCGGAAATACCATTGCTGTTGATGCTGACATGCCTTTTAGTGGCTTGACAACATTTGGAGGTTCTTTCTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTAGATGAAATAACACTTGTGGACACTCCTGGTGTCCTATCTGGAGAGAAACAAAGGACTCAACGAAGCTATGATTTCACTGGTGTAGTGTCTTGGTTTGCTGCAAAATGTGATCTCATTCTTCTCCTGTTTGATCCTCATAAACTAGACATCAGTGATGAGTTTAAACGCGTAATCACATCTTTACGTGGTAATGATGACAAGATACGAGTGGTTTTGAATAAGGCAGATCAAGTTGATACTCAACAACTTATGAGAGTATATGGAGCATTGATGTGGTCATTGGGGAAAGTTCTAAATACGCCCGAAGTTTCACGTGTATACATTGGCTCATTTAACGATAAGCCTATAGACGAAGGCTTCGCTAGTTCATTAGGACAAGATCTCTTTGAGAAGGAACAAAATGATCTGCTTGCAGATTTGATAGATATTCCAAGGAAGGCATGCGATCGCCGGATTAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGTATATAATTAGCCACCTGAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAAAGACTTGTTGACAATCTTGAGGAAGAATTTGCAAAGGTTCAAAGAGAGTTTCATCTACCTGCTGGTGATTTTCCCAATGTTGAACACTTCAGAGAAGTTTTAAGTGGTTATAGCATCGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCTGTGGATGACATGCTTGGATATGAAATACCAGAGCTTTTAAAGAAATTCAGAAATCCTTACGATTAA 1620 0.4043 MKTGSRSKEETKTYQEWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQLWNLADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQIDKENIEPPTLEGLDALVAQKSLTITTAPEVNGIAQPQLFATNRWFSSKSSKKLPLNSVTSIIDGLKRLYIERLKPLEVTYRYNDFVSPLLTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDIFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPIDEGFASSLGQDLFEKEQNDLLADLIDIPRKACDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQRLVDNLEEEFAKVQREFHLPAGDFPNVEHFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01241 539 CDD EH 14 80 IPR000261 GO:0005515
Spst6g01241 539 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 188 423 IPR030381 GO:0005525
Spst6g01241 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 461 IPR027417 -
Spst6g01241 539 Pfam Cytoskeletal-regulatory complex EF hand 9 75 IPR000261 GO:0005515
Spst6g01241 539 Pfam Dynamin family 194 353 IPR045063 -
Spst6g01241 539 Coils Coil 462 482 - -
Spst6g01241 539 Pfam N-terminal EH-domain containing protein 157 189 IPR031692 -
Spst6g01241 539 CDD EHD 193 437 - -
Spst6g01241 539 ProSiteProfiles EF-hand calcium-binding domain profile. 46 78 IPR002048 GO:0005509
Spst6g01241 539 PANTHER EH DOMAIN 9 536 - -
Spst6g01241 539 SMART efh_1 13 41 IPR002048 GO:0005509
Spst6g01241 539 SMART efh_1 47 75 IPR002048 GO:0005509
Spst6g01241 539 FunFam EH domain-containing protein 1 194 422 - -
Spst6g01241 539 SUPERFAMILY EF-hand 7 92 IPR011992 -
Spst6g01241 539 Gene3D - 158 530 - -
Spst6g01241 539 Gene3D - 4 103 - -
Spst6g01241 539 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Spst6g01241 539 Gene3D - 194 422 IPR027417 -
Spst6g01241 539 SMART eh_3 3 103 IPR000261 GO:0005515
Spst6g01241 539 ProSiteProfiles EH domain profile. 10 104 IPR000261 GO:0005515
Spst6g01241 539 Pfam Domain of unknown function (DUF5600) 429 530 IPR040990 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01241 Spst-Chr6 11452819 11456590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g01241 4 539 EF-hand Containing Proteins AT4G05520 77.985 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01241 K12483 - gmx:100809091 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01241 6 11452819 11456590 Spst6g01241 6 11452819 11456590 ECH
Spst3g03260 3 82562781 82567033 Spst6g01241 6 11452819 11456590 PCT