Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g01023 ATGTCTCTCCCCACCAAACGGTCGGGCACCGCTGGTTCCTCCCCGTCGCCGCCACCCCCTATGAAAAAGGCCAAGTCGCTCCTCCTGCGCGCCCCATCCGACGACGCCGTTGTGGACTCTTCCCCCATGCCTCTCGACGACGATCTACCCAATGCCCGCGCTGCCAATCTCTCCCGCAAGAAAGCCACCCCGCCCCAGCCCGCCAAGAAGCTCCTCATCAAGCTCCATAAAGCTAAACCGACATTGCCCACAAATTTTGAGGAAGATACATGGGCAAAACTAAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCTAACTCATGTGACTTAGAGAAGCTTTATCAGGCTGTGAATGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACATATATCTGCTGCACTGCAGTCTTTGGTTGGCCAGAGCCCAGATTTGGTTGTTTTTCTGTCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACTTATGTGAAGCAAACGGCAAATGTCCGGTCATTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCTGAAGTAGAACACAAAACTGTTACTGGTCTTCTACGAATGATTGAAAGTGAAAGAAAAGGTGAAGCAGTGGATAGAACCCTTCTAAACCACCTTTTGAAGATGTTTACTGCTCTGGGAATTTACGCTGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCAGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTATTTGAAGCATGTGGAGATAAGATTGCAAGAAGAACATGAAAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACGGCAGAAAAGCAGCTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGCTTTGCAATGCTTATGGATGGGAATCGTATTGAAGATCTTCAGAGAATGTATTCACTCTTTTTAAGGGTCAGTGCCCTTGAGTCACTGAGGCAGGCAATTAGTTCTTACATTAGGATAACTGGTCAGGGCATTGTTTTGGACGAGGAGAAAGATAAAGATATGGTTTCATCCCTTTTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTCCGTGCAGGTAACAAGGGAACCTCAGAAGAAGAGTTAGAGGGTACACTTGATAAAGTCCTGGTTTTGTTCAGGTTCATACAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTGCTGTTAGGAAAGAGTGCTTCTATTGATGCCGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACTAACAAACTAGAAGGGATGTTTAAGGATATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGCAAATACAGTGGAAGGCGTCTGATGTGGCAAAACTCATTAGGTCACTGTGTCTTAAAGGCAGAGTTTCCTAAAGGGAAAAAAGAGCTGGCTGTCTCCCTATTTCAGACTGTTGCTCTAATGTTATTCAATGACGCTGAGAAACTAAGTTTTCAAGATATCAAGGACTCCACTGGTATTGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCCTGTGGAAAAGTTCGTGTCCTACAAAAGTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGATGGATTTACAGCTCCTCTGTACCGTATAAAGGTGAATGCAATTCAGTTGAAGGAGACAGTGGAAGAGAACACAAGCACAACTGAAAGAGTCTTCCAAGACCGTCAGTATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACAAGGAAAGTGCTTAGTCATACTCTTCTTATTACCGAACTCTTCCAACAGCTCAAATTTCCAATAAAACCAGCGGACTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGGGACAAGAACAACCCTCAAATATACAATTACCTGGCATAG 2364 0.4302 MSLPTKRSGTAGSSPSPPPPMKKAKSLLLRAPSDDAVVDSSPMPLDDDLPNARAANLSRKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERKGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEIRLQEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRIEDLQRMYSLFLRVSALESLRQAISSYIRITGQGIVLDEEKDKDMVSSLLEFKASLDTTWEESFSKNEAFCNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVALMLFNDAEKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNDGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g01023 787 SUPERFAMILY Cullin homology domain 428 698 IPR036317 -
Spst6g01023 787 FunFam Cullin-4 like 430 541 - -
Spst6g01023 787 Gene3D Cullin; Chain C, Domain 2 546 701 - -
Spst6g01023 787 Gene3D - 714 787 IPR036388 -
Spst6g01023 787 ProSiteProfiles Cullin family profile. 431 660 IPR016158 -
Spst6g01023 787 SMART Cullin_Nedd8_2 716 781 IPR019559 -
Spst6g01023 787 Gene3D Cullin Repeats 78 209 - -
Spst6g01023 787 FunFam Cullin-4 like 546 702 - -
Spst6g01023 787 FunFam Cullin 4B 714 787 - -
Spst6g01023 787 SUPERFAMILY "Winged helix" DNA-binding domain 699 787 IPR036390 -
Spst6g01023 787 Gene3D Cullin Repeats 328 429 - -
Spst6g01023 787 SUPERFAMILY Cullin repeat-like 85 427 IPR016159 -
Spst6g01023 787 Pfam Cullin protein neddylation domain 719 779 IPR019559 -
Spst6g01023 787 Gene3D Cullin Repeats 430 541 - -
Spst6g01023 787 MobiDBLite consensus disorder prediction 1 26 - -
Spst6g01023 787 Pfam Cullin family 91 688 IPR001373 GO:0006511|GO:0031625
Spst6g01023 787 SMART cul_2 461 610 IPR016158 -
Spst6g01023 787 FunFam Cullin 4B 328 429 - -
Spst6g01023 787 PANTHER CULLIN 87 783 IPR045093 -
Spst6g01023 787 FunFam Cullin-4 78 209 - -
Spst6g01023 787 Gene3D Cullin Repeats 213 326 - -
Spst6g01023 787 MobiDBLite consensus disorder prediction 32 51 - -
Spst6g01023 787 ProSitePatterns Cullin family signature. 760 787 IPR016157 GO:0006511|GO:0031461|GO:0031625
Spst6g01023 787 FunFam Cullin 3 211 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g01023 Spst-Chr6 9338582 9353468 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g01023 K10609 - gmx:100805491 1481.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01023 6 9338582 9353468 Spst6g01023 6 9338582 9353468 ECH
Spst6g01023 6 9338582 9353468 Spst3g03064 3 80414741 80420542 PCT