Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00941 ATGGAGGGCAAAATCTTGGATTATCAGAATCAGGTGCAAGCTGTGGAAAATTTATTTCCAAGGCTTTCTAGTTTCTCCCTTAGCGACCAGCAATCCAATTCCGATTCTCCTCTGGATGATGAAATGGGCGGTAGGAGGAGGAATTGCGTTACTGGAGAGAATTTTGATTCTTTTGCCTCTGATAGCACTGGACGGCATTGTATGAATTCCTCTAGATTATATCCTGAATTCCCCGAAAAACAATTGGAAAAACATAACGAAGACATGGAGTGTTCAGCTAATGTTCAGAAGCAGGGAAGGTACTTCTATTATGATACTCCGCTGCAGGAAGATACTGGAGTTTGGATACCAGTTTCAGTTCCACCTATGCTGGAAGATGATCACAAAGAGTGGTCCAAAGGTTTTCACTCAAACGGTGGCTATTTTCCTGATGATGACTTGGGGTGGAATCATTATGTTGGAGATGAAAGGGAATTAACTATGTGGGATGTGGTAGCAGAAATGTTGCTTGTGGCTCGTGGAAAAGTGACTTCTTTGGCATCAGGAGATATTCATACATATAACTTTTCGTGGATATCCAGTCATGTACTGCTTGAACAAGCTTGGAGAGAGATGGCACAAACCCTTACAGAGGCCAACTTTGGTAATGCGAAGGAACTACTAGAAGCTGAGCCTCCAAAATGGTTACCTGATAGCGCTGCGTCTTCTTGTATGCTTTGTGGTGTGAGGTTTCATCCTATCATGTGCTCCCGACATCACTGCCGGTTTTGTGGAGGAATATTTTGTGGTGAGTGCTCTAAAGGGCGGAGCTTGTTGCCATCAAAATTCCGAGTTTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCCGACTTGAGTCTGTACAGCCTTATTTGATGGATCAGGTAAGCAATGCTGCACAGTTGCCAACCCATGACCTGACAGATTTAAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGGGCCAGTCTATGGAATATGAAATTTACAAGGCAACCAACACTATCAAGGCTTATAATAAGATTGGTCTTCTAAGGCCCGAGAAGTCAATTCCAGATGTGATTCTGAGAAAAGCAAAAGGCCTTGCAATTATCACTGTGGTCAAAGTAGGAGTAGTAGTTACTTATAATATTGGAACGGGACTAGTGGTTGCACGTAGGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTCTCCACCTTTGGTGTAGGGTGGGGGGCTCAGGCTGGAGGAGAGTTGACAGACTTCATCATTGTCTTAAGAACAAATGATGCTGTCAAGACATTTAGTGGTAATATGCATATTTCACTGGGAGCTGGTTTGAGTGCTGCAGTAGGCATTGTTGGTAGATCAGTTGAAGCTGATGTTCGGGCTGGTGACGGTGGTTATGCTGCTTGTTATACCTACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGAAGTATGGCGATTACTCGCACGCAAGAAAATTCCCGTTTCTATGGTAGCCAGTCTATAGCTGCGACAGATATACTTGGCTCGTTGCCTAAGCCACCTGCCGCTGCCATTCTCTACCGTGCACTTACTGATCTCTATTCGAAGCTTGATGGATAA 1623 0.4424 MEGKILDYQNQVQAVENLFPRLSSFSLSDQQSNSDSPLDDEMGGRRRNCVTGENFDSFASDSTGRHCMNSSRLYPEFPEKQLEKHNEDMECSANVQKQGRYFYYDTPLQEDTGVWIPVSVPPMLEDDHKEWSKGFHSNGGYFPDDDLGWNHYVGDERELTMWDVVAEMLLVARGKVTSLASGDIHTYNFSWISSHVLLEQAWREMAQTLTEANFGNAKELLEAEPPKWLPDSAASSCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLESVQPYLMDQVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNKIGLLRPEKSIPDVILRKAKGLAIITVVKVGVVVTYNIGTGLVVARREDGSWSAPSAVSTFGVGWGAQAGGELTDFIIVLRTNDAVKTFSGNMHISLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMAITRTQENSRFYGSQSIAATDILGSLPKPPAAAILYRALTDLYSKLDG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00941 540 PANTHER SH3YL1 PROTEIN 191 538 - -
Spst6g00941 540 FunFam Zinc finger family protein 217 299 - -
Spst6g00941 540 SUPERFAMILY FYVE/PHD zinc finger 226 305 IPR011011 -
Spst6g00941 540 MobiDBLite consensus disorder prediction 26 55 - -
Spst6g00941 540 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 231 293 IPR017455 -
Spst6g00941 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 304 IPR013083 -
Spst6g00941 540 Pfam FYVE zinc finger 227 292 IPR000306 GO:0046872
Spst6g00941 540 Pfam Las17-binding protein actin regulator 409 532 IPR007461 -
Spst6g00941 540 SMART fyve_4 223 294 IPR000306 GO:0046872
Spst6g00941 540 CDD SYLF_FYVE 334 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00941 Spst-Chr6 8605039 8608368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00941 228 288 EF-hand Containing Proteins AT3G14270 36.364 1.02e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00941 K20523 - gmx:100813648 966.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00941 6 8605039 8608368 Spst6g00941 6 8605039 8608368 ECH