Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00761 ATGATGAATACTCTTCTAATCAGTGTTGCTTTTGAGTTGATACCACAGCCCCCATATGTTGTGCAATGCGAGAAAGAGAGAGGAGAAGGGAATTTGAATATGGGGTATTTTAAGGTATATCCCGTGGATGCTCTTCCAATCAGCGTTGCTTTTGAGGTGGTAGTGCAGGGCCTACCCACACTTTTGCTGTCTGTTCTGAAATCTGATATTATATCCATGTCCCCATTTGCAATCAACTTGAACAAGTTTTCACGCAGCAATCTTCCACCAAAGAGCAAGGCATTTCTCAGAGAAGAGGTGGAGATGCAGGGAAAACTTTGGGGGGTGCAAAAAGTAAAGGTTAAGAGAAAGAAACAGAGAAACCCTAGCGAAGCCATTGAAGAGATGATTCTTCGCAGAATCGCAGTTGCAAGCAGGTCATACTACACGAGCAGGACGAAGAAACCGAGCCTGTACTCGAAAATCAGTCCCCTCGGAAATCCCAACACCAGTGTGGTACCAGTGCTCGACGATTGGATCTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCATCGCATCATTCGCGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCTCTCCAGGTATCTGAGTGGATGTACATGAATGGTGTGTGCATATTCTCTCCAACGGAACACGCGGTGCATTTGGATCTGGTTGGCAAGGTTCAGGGATTCTCTTCTGCAGAAAGCTATTTCGATGCCTTGAGGGATAAAGACAAAACCGATAAGACCTACGGTGCTCTCTTGAATTGCTATGTCCGCCAGCGCGAAACTGACAAGGCTCTGTCTCATTTGCAGAAAATGAAGGAGTTGGGGTTCGCTTCGTCTCCTCTAACTTACAATGACATTATGTGTCTGTATACAAACATTGGACAGCATGAGAAGGTTCCTGATGTGCTAAGTGAGATGAAAAAAAAACAAGTCTTGCCTGATAACTTTAGCTACAGGATCTGTATAAATTCTTATGGAGTGAGGTCTGATATTGGTGGAATGGAAAGAGTACTGAAAGAGATGGAGACTCAACCACACATTGTGATGGATTGGAACACTTACTCTATCGTAGCCAATTTTTATATAAAAGCTGGGCGTACAAGGGAGGCAGTGTATGCACTAAAGAAATCTGAGGAAAGGCTAAATAATAAAGATGGCCAGGGTTACAATCATCTCATCTCTCTGTATGCACGACTTGATTTGAAGAATGAGGTCATGAGAATATGGGATCTGGAGAAAAATGCTTGCAACAGGTGCATAAACAGGGATTTCACGACCTTGTTAGAATCTCTGGTAAAGCTTGGGGAGCTCAATGAAGCTGAGAAAATACTTTTGGAATGGGAATCCTCTGGCAATTGTTATGATTTCGGAATCCCTTGTATTGTAATCATTGGGTATGCACAAAAAGGTTTGCATGAGAAAGCCGAGGCCATGCTCCTAGAGTTACAAAATAAGGAAAAGGTCACTACCCCAAACTGTTGGTCGATAGTGGCAGGTGGATACATTCACAAGGGTGAGATGGAGAAAGCATTGAGGTGCTTTAGAACTGCCCTCTCTATGTACGTGGAAAATAAAGGGTGGAAGCCTAACGCAAAGGTGGTTGCAGAACTATTGCGTTGGATTGCTGATAACGGCAGTATTGAAGATGCAGAAGATTTTGTCAGATTATTAAGAAATGCCGTCCCAGTCAATAGACAAATGTATCACACCCTAATCAAGGCTTATATTCGAGGTGGTAAAGAAGTGGATGAGCTTTTAGACCACATGGAGAAAGATGGCATCGATGAAAACAAAGAAACTAAGAAAATCATTACATCATGA 1836 0.4336 MMNTLLISVAFELIPQPPYVVQCEKERGEGNLNMGYFKVYPVDALPISVAFEVVVQGLPTLLLSVLKSDIISMSPFAINLNKFSRSNLPPKSKAFLREEVEMQGKLWGVQKVKVKRKKQRNPSEAIEEMILRRIAVASRSYYTSRTKKPSLYSKISPLGNPNTSVVPVLDDWIYKGNKVRVAELHRIIRDLRKRSRFSQALQVSEWMYMNGVCIFSPTEHAVHLDLVGKVQGFSSAESYFDALRDKDKTDKTYGALLNCYVRQRETDKALSHLQKMKELGFASSPLTYNDIMCLYTNIGQHEKVPDVLSEMKKKQVLPDNFSYRICINSYGVRSDIGGMERVLKEMETQPHIVMDWNTYSIVANFYIKAGRTREAVYALKKSEERLNNKDGQGYNHLISLYARLDLKNEVMRIWDLEKNACNRCINRDFTTLLESLVKLGELNEAEKILLEWESSGNCYDFGIPCIVIIGYAQKGLHEKAEAMLLELQNKEKVTTPNCWSIVAGGYIHKGEMEKALRCFRTALSMYVENKGWKPNAKVVAELLRWIADNGSIEDAEDFVRLLRNAVPVNRQMYHTLIKAYIRGGKEVDELLDHMEKDGIDENKETKKIITS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00761 611 SUPERFAMILY TPR-like 356 584 IPR011990 GO:0005515
Spst6g00761 611 Pfam PPR repeat 498 520 IPR002885 -
Spst6g00761 611 Pfam PPR repeat 429 456 IPR002885 -
Spst6g00761 611 Pfam PPR repeat 252 281 IPR002885 -
Spst6g00761 611 Pfam PPR repeat 466 489 IPR002885 -
Spst6g00761 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Spst6g00761 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Spst6g00761 611 SUPERFAMILY TPR-like 242 525 IPR011990 GO:0005515
Spst6g00761 611 Pfam PPR repeat family 287 330 IPR002885 -
Spst6g00761 611 Gene3D Tetratricopeptide repeat domain 159 333 IPR011990 GO:0005515
Spst6g00761 611 Gene3D Tetratricopeptide repeat domain 334 418 IPR011990 GO:0005515
Spst6g00761 611 Gene3D Tetratricopeptide repeat domain 419 524 IPR011990 GO:0005515
Spst6g00761 611 Gene3D Tetratricopeptide repeat domain 525 611 IPR011990 GO:0005515
Spst6g00761 611 FunFam Pentatricopeptide repeat-containing protein mitochondrial 181 392 - -
Spst6g00761 611 PANTHER OS12G0527900 PROTEIN 128 597 - -
Spst6g00761 611 NCBIfam pentatricopeptide repeat 287 319 IPR002885 -
Spst6g00761 611 NCBIfam pentatricopeptide repeat 252 281 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00761 Spst-Chr6 6866779 6871330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00761 150 577 EF-hand Containing Proteins AT1G02150 32.867 8.58e-75 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00761 - - gmx:100805658 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00761 6 6866779 6871330 Spst6g00761 6 6866779 6871330 ECH