Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00027 ATGGAGGAACAAATCCCGTTTAAGAATCTCCATAGCCGAGAGTATTCGGGTCACAAGAAGAAGGTGCACTCTGTGGCATGGAATTGCATTGGCACAAAACTTGCTTCTGGCTCTGTGGACCAAACTGCGCGAATATGGCATATTGAGCCGCATGGGCATGGCAAAGTCAAAGACATTGAATTGAAAGGTCACACCGATAGTGTGGATCAGTTATGCTGGGACCCCAAACATGCTGATTTGATTGCAACTGCATCGGGTGACAAGACTGTTCGCTTATGGGATGCTCGAAGTGGAAAATGCTCACAACAGGCCGAACTTAGTGGGGAGAATATCAACATCACTTACAAACCTGATGGGACTCATGTAGCTGTTGGTAACCGAGATGACGAATTAACAATACTGGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAATTATGAGGTGAATGAGATTGCTTGGAACATGACAGGCGAGATGTTCTTTCTAACAACGGGAAATGGGACCGTGGAAGTACTGTCTTACCCATCCCTTCGACCTCTTGACACTCTCATGGCTCATACAGCCGGTTGTTATTGCATTGCAATTGATCCAGTAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGAATATCTCAGAGATGCTCTGCGTGCGTACCTTCACAAAGCTGGAGTGGCCTGTCCGGACGATTGGCTTCAACTATACTGGGGATTTAATTGCTTCTGCAAGTGAAGACTTGTTCATTGATATATCAAATGTTCAAACTGGAAGAACACTGCATCAAATTCCTTGTAGGGCTGCTATGAACAGTGTGGAGTGGAATCCTAAATACAACTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGCATTTTTGGTTTTGAAAATGCTTAG 942 0.4437 MEEQIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWNISEMLCVRTFTKLEWPVRTIGFNYTGDLIASASEDLFIDISNVQTGRTLHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00027 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 5 310 IPR040132 GO:0006406
Spst6g00027 313 Gene3D - 159 299 IPR015943 GO:0005515
Spst6g00027 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Spst6g00027 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Spst6g00027 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Spst6g00027 313 FunFam THO complex subunit 3 1 165 - -
Spst6g00027 313 CDD WD40 13 256 - -
Spst6g00027 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Spst6g00027 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Spst6g00027 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Spst6g00027 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Spst6g00027 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Spst6g00027 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Spst6g00027 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Spst6g00027 313 FunFam THO complex subunit 3 175 309 - -
Spst6g00027 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Spst6g00027 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Spst6g00027 313 Gene3D - 6 158 IPR015943 GO:0005515
Spst6g00027 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Spst6g00027 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Spst6g00027 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Spst6g00027 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Spst6g00027 313 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Spst6g00027 313 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Spst6g00027 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Spst6g00027 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00027 Spst-Chr6 549058 553034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00027 151 309 Miscellaneous Gene Families AT5G08390 23.125 3.25e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00027 K12880 - gmx:100812126 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00027 6 549058 553034 Spst6g00027 6 549058 553034 ECH