Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00011 ATGAAGATCACTGTCATGACCGCTGATGAGCAAATTCTCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAATGTCAAAGCATTGCTCGAGGTTGAGGTCTTGTTGGACTTTAATTTGTGTGGCCCTTCTGTTGTTGTTGGGTGTGTTTTGTCTATGATTGGATTTCTTGTTGTGTTTTTTGATGGTAAACTTTGTGCATATGAGAAGACTAGTGTGCCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAGGTGAGGAATTCTGATAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTGTCTGGTACTGGCGCCGCCTCTAGTGGATCTACCAATGATTTGAGTTTGAATACTGATGGATCGGCTGTCAACCCTGGTGCTTTCCAGCAGCACATAAGACGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCCATTTTAGGGAATGATCTGAATAGATTGCAGGAAGTTTTACGTATGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAGAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTCAGACTTTTAGATCAGCGATACAAAGGGATTGCTCATGGAGTGGGCCAGTCAGAAATATTGGGTCGTATTCATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGACTCTCCGAATATGGAGTTCCTCTTTGGACTGGATATGCTCCGAAAACACCAGTGTATAATTGATTTGAAAGAAAGTGTTTTGCGGGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGCTTTTAGACGAGGAGAAGTATGCTAAGGAAGCTTCTGGCTCTGGTGTTGAAATTACATCAGGAAGCAATAATCCATCAACAGGAGGCCACCCTTCTGGAGGAGCTTCTGGTAACAGAGCTAAGGAATCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGGTTTGAAAGAAATGCAGTTGTAGAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCTGCAGGCTTTCTTTTTGGGGGCTAG 1335 0.4307 MKITVMTADEQILTLDVDPHESVENVKALLEVEVLLDFNLCGPSVVVGCVLSMIGFLVVFFDGKLCAYEKTSVPLQQQQLLFNGKEVRNSDKLSALGVKDDDLLMMVSGTGAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRMRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQRGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRLLDEEKYAKEASGSGVEITSGSNNPSTGGHPSGGASGNRAKESEFEAKVAKLVELGFERNAVVEALQLFNGNEEQAAGFLFGG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00011 444 SUPERFAMILY UBA-like 384 444 IPR009060 GO:0005515
Spst6g00011 444 SUPERFAMILY Ubiquitin-like 1 115 IPR029071 -
Spst6g00011 444 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 401 444 IPR015940 -
Spst6g00011 444 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 441 - -
Spst6g00011 444 Gene3D - 1 120 - -
Spst6g00011 444 FunFam DNA damage inducible 1 homolog 2 213 360 - -
Spst6g00011 444 CDD UBA_scDdi1_like 407 442 - -
Spst6g00011 444 CDD RP_DDI 220 343 IPR019103 GO:0004190|GO:0006508
Spst6g00011 444 Pfam Ubiquitin family 69 107 IPR000626 GO:0005515
Spst6g00011 444 Gene3D Acid Proteases 214 360 IPR021109 -
Spst6g00011 444 MobiDBLite consensus disorder prediction 374 401 - -
Spst6g00011 444 Coils Coil 168 188 - -
Spst6g00011 444 CDD Ubl_Ddi1_like 1 107 IPR033882 -
Spst6g00011 444 ProSiteProfiles Ubiquitin domain profile. 1 107 IPR000626 GO:0005515
Spst6g00011 444 MobiDBLite consensus disorder prediction 376 394 - -
Spst6g00011 444 SUPERFAMILY Acid proteases 221 336 IPR021109 -
Spst6g00011 444 Gene3D - 380 444 - -
Spst6g00011 444 Pfam UBA/TS-N domain 407 440 IPR015940 -
Spst6g00011 444 SMART uba_6 406 443 IPR015940 -
Spst6g00011 444 Pfam Aspartyl protease 213 335 IPR019103 GO:0004190|GO:0006508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00011 K11885 - gmx:100779464 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00011 6 390900 398848 Spst6g00011 6 390900 398848 ECH