Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01458 ATGATCCTCTGGCTCTCCTTAACTGTCTCAAACTCATCGTTGATAATATTTTCATACAGAACCGTGTGTGTATTTATATACACACAAAGTGTAGAGTCCAAATCTAAATCTGGGAACTACAATTTTCCATCTCTTCTTTGTCTGAAGATTTTCTCTTTCTTGCCTTCGTCTTTTCTCCTGCTTTGCTTCACCGGTCATCAATTTAAGTTGGCTGACATGGCTACGCATACACCAAAAAACATCCTCATAACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCCAACCGGCTTATCCGAAATTATCCCCACTACAAAATTGTTGTTCTTGACAAACTTGATTATTGTTCAAATCTGAAGAACCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGAGATATTGGAAGTGCTGACCTTGTCAACTACCTACTCATTACCGAGTCCATTGACACAATAATGCACTTTGCAGCTCAAACCCATGTTGACAACTCGTTTGGCAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAGGCCTGCAAGGTAACTGGACAGATCAAGAGGTTCATCCATGTCAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCATCACAGTTACTTCCCACAAATCCTTACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGCAGGTCATATGGGTTACCTGTGATCACAACACGTGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAAAAGTTAATTCCAAAGTTCATTCTCCTGGCAATGCAAGGCAAGCCTCTTCCAATCCATGGGGATGGTTCTAATGTAAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGACATGTTTACAATATTGGTACCAAGAAAGAAAGGAGAGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGAAGGACCCAGATGCTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGACGATGAAAAGCTGAAGATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTACATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCCGGTGGATTGGAGAGACATTTTGATGGATCTGATGAAGAAAAACCTTCATCATATATCTCAACTAATACTCGAATGGTCGTTCCAACATCCAAAAATGTTAGCCCTTCTCCGAAACATTCTCTCAAGTTTTTGATCTATGGTAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAATTGTGTGAAAAGCAAGGGATTCCCTATGAATACGGAAGAGGACGCCTGGAGGATAGATCATCACTTGTGGCTGATATCCAGAATGTGAAGCCTACACACATTTTTAATGCTGCAGGAGTGACTGGAAGACCCAATGTTGATTGGTGTGAATCCCATAAAACAGAAACCATCCGCACCAACGTTGCTGGTACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGACTCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGATGAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAATTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAGGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGTAATCCACGCAACTTCATCACCAAGATTTCTCGTTATAACAAAGTCGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCTATTTCTATTGAGATGGCGAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCAGTGAGCCACAATGAGATTCTTGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGGTTAACTTCAACCTTGAAGAGCAAGCCAAGGTGATCGTAGCTCCACGGAGCAACAATGAGATGGATGGAACCAAACTGAAGAAAGAGTTCCCTGAGGTTCTTTCCATCAAGGAATCACTGATCAAGTATGTGTTTGAGCCAAACAAGAAAACTGCTTAA 2226 0.4227 MILWLSLTVSNSSLIIFSYRTVCVFIYTQSVESKSKSGNYNFPSLLCLKIFSFLPSSFLLLCFTGHQFKLADMATHTPKNILITGAAGFIASHVANRLIRNYPHYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKKDPDASIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPSSYISTNTRMVVPTSKNVSPSPKHSLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGRGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGLLMINYATGCIFEYDEAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWVNFNLEEQAKVIVAPRSNNEMDGTKLKKEFPEVLSIKESLIKYVFEPNKKTA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01458 741 Pfam RmlD substrate binding domain 457 627 IPR029903 -
Spst5g01458 741 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 75 410 - -
Spst5g01458 741 Gene3D - 272 394 - -
Spst5g01458 741 NCBIfam dTDP-glucose 4,6-dehydratase 80 400 IPR005888 GO:0008460|GO:0009225
Spst5g01458 741 FunFam UDP-glucose 4,6-dehydratase 81 281 - -
Spst5g01458 741 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 447 741 - -
Spst5g01458 741 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 450 730 IPR036291 -
Spst5g01458 741 CDD dTDP_GD_SDR_e 79 396 IPR005888 GO:0008460|GO:0009225
Spst5g01458 741 Gene3D - 447 741 - -
Spst5g01458 741 CDD dTDP_HR_like_SDR_e 457 729 - -
Spst5g01458 741 Gene3D - 81 385 - -
Spst5g01458 741 Pfam GDP-mannose 4,6 dehydratase 82 387 IPR016040 -
Spst5g01458 741 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 404 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01458 Spst-Chr5 42829714 42833183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01458 71 393 Miscellaneous Gene Families AT4G00110 26.957 2.38e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01458 K12450 - gmx:100775641 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01458 5 42829714 42833183 Spst5g01458 5 42829714 42833183 ECH