Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01406 ATGGCGCAGACTCAAGCCCTAACCTTCATTAACGAGATTCAATCTCTCGTCTCCGATAAACTTCAAGTGGTTTCGTACAAATGGTTGAGTCGCAATTATATGGTATCGTCCGATGAAGCGAAGAGGGTGCTTCAGGAGTTTGTGCAAAAGAACGAGGGTGAGTTGGAGGTGGTGTATGCTTTGTCTGGTTGGTTAAAGAGCAACGATCGTAGTTACCATGTAAGGCTCGTTACTGGGCCGAAGCTTGCAGAAGCACAGAAAGAATTTGATGGGGATTGTTCAGTTCAGGTATATAGTGTGCAAGCTAGCATTCCAAAGGATCCAGCTCTGCTTTGGAATGCTGAATTTATTCAGGCAGAGGAACTCTTCAAGCAGCCCTCCTCAGACGACAATTGTTTGAGGGATAATAGGTTCTGTGGGATTTCCAATTCTTTTGTACGAAGGAATGTGGATGCCTCGACAGTATTTTCTGCAGCTCCACAACCAAAATCTGCAGTAGGTGAGGGACCAACAAAGATTAACGCAGTTCAACAATCTCCTAAAAATATAGCACGTGATTCTATTGACAAAGCTGATACCAAACGACAGAATGTGATAAAAGAAGTCAAGAGTGAAAGCAATGGTACAGGAAATACTGTAGTTCTGGATAACATCAATAAGCCTACAGCAGCGAAAGAAAAGGCCCTACCCCTTCCCACAGGCAAAAAGAAAGTACAAGTTGATAAAAGTGGTTCTGCTGCTGGAGGTTCATTAACAAGCTTTTGGGGCCGTGCATCTGCAAAACCGAAGCCTTCCACCACATCAGTAGAAAATAGTAGCACAGTTTCAAATCCAGCTGAATCTACTGAAGATGCCCAAACTGCTTGTGTAGAAGAGTGTGACAGTGGTAATGATGATAATCAAAATGTCTCCTTGAGAAGGTCATCCAATAGGAAAAGAAGAGTTGTCTTTGATTTCTCAGATGAAGATGAAGATGTTGTAAATTTAGCATCACCTGATTTGCCAAATAAACAATTATCTCAAGATTCTAGACAAAATGACAAAAGCACATCGGAGAAAACCACTTTGAATTTTGACTTGCAGGAAGAAAATAAATCAGGGGTTAAGGAAGAGAAACCAACTGACCAAAAGGCTCACCTACCACTGAGAGAAAATTTATCAGCTATCAGCAAGTGCACAAATACTGAAAAATCATCTTCTGAGAAGTTACATATATGTGCTCCTGATGTTCGTGTAAATAAGGATAGTGTAAACAATGCCCCTCCTTGTTCACCTAAAAGGAGAAAAGTGATGAAAACCAGAATTGATGAACGAGGCAGAGAAGTAATTGAAGTAGTCTGGGAAGGGGAGGAGACAGTAGTGAAGAAACCTGACAAGGTTACAACAAAGAAAGCTGACAGTCATACAAATGCTGTCAATAGTGCTCAGGCAACTAAGAAGCCACCAGCCAATTCAAATGCCAAAAATGGAAAAGGAGGAAACAAGAAAGCTGGAAACAAGGATACCAAACAGGGCAATATACTTTCATTTTTCAAGAGAGCTTGA 1545 0.4123 MAQTQALTFINEIQSLVSDKLQVVSYKWLSRNYMVSSDEAKRVLQEFVQKNEGELEVVYALSGWLKSNDRSYHVRLVTGPKLAEAQKEFDGDCSVQVYSVQASIPKDPALLWNAEFIQAEELFKQPSSDDNCLRDNRFCGISNSFVRRNVDASTVFSAAPQPKSAVGEGPTKINAVQQSPKNIARDSIDKADTKRQNVIKEVKSESNGTGNTVVLDNINKPTAAKEKALPLPTGKKKVQVDKSGSAAGGSLTSFWGRASAKPKPSTTSVENSSTVSNPAESTEDAQTACVEECDSGNDDNQNVSLRRSSNRKRRVVFDFSDEDEDVVNLASPDLPNKQLSQDSRQNDKSTSEKTTLNFDLQEENKSGVKEEKPTDQKAHLPLRENLSAISKCTNTEKSSSEKLHICAPDVRVNKDSVNNAPPCSPKRRKVMKTRIDERGREVIEVVWEGEETVVKKPDKVTTKKADSHTNAVNSAQATKKPPANSNAKNGKGGNKKAGNKDTKQGNILSFFKRA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01406 514 Pfam DNA polymerase subunit Cdc27 23 513 IPR019038 GO:0005634|GO:0006260|GO:0043625
Spst5g01406 514 MobiDBLite consensus disorder prediction 363 379 - -
Spst5g01406 514 FunFam DNA polymerase delta subunit 7 149 - -
Spst5g01406 514 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 6 147 IPR041913 -
Spst5g01406 514 MobiDBLite consensus disorder prediction 328 379 - -
Spst5g01406 514 MobiDBLite consensus disorder prediction 466 492 - -
Spst5g01406 514 MobiDBLite consensus disorder prediction 259 284 - -
Spst5g01406 514 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 1 514 IPR019038 GO:0005634|GO:0006260|GO:0043625
Spst5g01406 514 MobiDBLite consensus disorder prediction 333 362 - -
Spst5g01406 514 MobiDBLite consensus disorder prediction 452 514 - -
Spst5g01406 514 MobiDBLite consensus disorder prediction 225 309 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01406 K03504 - gmx:100812372 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01406 5 38660002 38665903 Spst5g01406 5 38660002 38665903 ECH