Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst5g01393 | ATGGCGGGTTACAGAGCCGACGACGACTACGACTACCTCTTCAAGGTTGTGCTCATCGGCGACTCCGGTGTCGGTAAGTCCAACCTGCTTTCTCGCTTCACGAAGAACGAGTTCAACTTGGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACTCGCACCTTGAACGTCGATTCCAAAGTCATCAAGGCCCAGATCTGGGACACCGCAGGCCAAGAAAGGTATCGTGCAATCACCAGTGCTTACTATCGCGGGGCAGTGGGAGCGCTTCTCGTGTACGACGTGACTCGCCATGCGACGTTCGAGAATGTTGACAGATGGCTGAAAGAGTTGAGAAATCACACAGATGCCAACATTGTGGTGATGCTGGTTGGAAACAAATCAGACCTTCGCCACCTGGTGGCAGTTACAACTGAAGATGGGAAGTCGTATGCTGAGAAAGAATCACTTTACTTCATGGAAACCTCAGCTCTGGAGGCTACGAATGTAGAGAATGCATTTGCTGAAGTTCTGACTCAAATCTACCGCATTGTTAGCAAGAAAGCAGTAGAGGGTGCTGAAAATGGAACTGCGTCTGTGCCTGCCAAGGGGGAGAAAATTGACCTGAAAAATGATGTGTCTGCTTTGAAGAGAGTTGGATGCTGCTCAAGCTGA | 654 | 0.5031 | MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDANIVVMLVGNKSDLRHLVAVTTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKRVGCCSS | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst5g01393 | 217 | PANTHER | DRAB11-RELATED | 7 | 199 | - | - | |
| Spst5g01393 | 217 | Pfam | Ras family | 15 | 175 | IPR001806 | GO:0003924|GO:0005525 | |
| Spst5g01393 | 217 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 179 | IPR027417 | - | |
| Spst5g01393 | 217 | SMART | rho_sub_3 | 16 | 173 | IPR001806 | GO:0003924|GO:0005525 | |
| Spst5g01393 | 217 | SMART | ras_sub_4 | 11 | 177 | - | - | |
| Spst5g01393 | 217 | SMART | ran_sub_2 | 19 | 209 | - | - | |
| Spst5g01393 | 217 | ProSiteProfiles | small GTPase Rab1 family profile. | 9 | 215 | - | - | |
| Spst5g01393 | 217 | PRINTS | Transforming protein P21 ras signature | 152 | 174 | - | - | |
| Spst5g01393 | 217 | PRINTS | Transforming protein P21 ras signature | 14 | 35 | - | - | |
| Spst5g01393 | 217 | PRINTS | Transforming protein P21 ras signature | 117 | 130 | - | - | |
| Spst5g01393 | 217 | PRINTS | Transforming protein P21 ras signature | 37 | 53 | - | - | |
| Spst5g01393 | 217 | PRINTS | Transforming protein P21 ras signature | 55 | 77 | - | - | |
| Spst5g01393 | 217 | ProSiteProfiles | small GTPase Ras family profile. | 2 | 217 | IPR001806 | GO:0003924|GO:0005525 | |
| Spst5g01393 | 217 | FunFam | ras-related protein RABA1f | 6 | 215 | - | - | |
| Spst5g01393 | 217 | Gene3D | - | 6 | 215 | IPR027417 | - | |
| Spst5g01393 | 217 | NCBIfam | small GTP-binding protein domain | 12 | 170 | IPR005225 | GO:0005525 | |
| Spst5g01393 | 217 | ProSiteProfiles | small GTPase Rho family profile. | 7 | 178 | - | - | |
| Spst5g01393 | 217 | SMART | rab_sub_5 | 14 | 177 | - | - | |
| Spst5g01393 | 217 | CDD | Rab11_like | 11 | 175 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst5g01393 | Spst-Chr5 | 38120093 | 38123085 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst5g01393 | K07904 | - | gmx:100810759 | 425.246 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst5g01393 | 5 | 38120093 | 38123085 | Spst5g01393 | 5 | 38120093 | 38123085 | ECH |