Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01366 ATGATTTTTGAACCTTGGGTACAGAAAAGAAGACTGGAATATGTAAAACATGATCATTTAATATTGAGAATATTACAGCATGTTCACAAGAACACCCTCCAAAGGATATTCACAACAAATGGAACTCCAAATGTGAGTGCCATAAGGCAATTATATAAGGAAATAGATCAAGATGGGAGTAGTGGTATATCAGCTTCTGAAGTGAAAGACCTTTTACTGAAAAACAAAGTTACTGAAACCAATTTCAATGAGGAGAAAGAAATAGAAGAAGTGTTGCGAATTTTTGACCTGGATGGTGACAAAAAAATAACCAAGGAGGAATTTGTTAGTGGATTCACAAAATGGCTTGAACAAACAAAGCATGCTTTAGAGACACAGAACTTCATTCTGGCAAGTAATAATGTTGAAAGCATTGACAGTGATGTGGTTGGTAGCCTTCTCACAGTAGATGGCAAACCTGATGAACATGCTATAAGAAGGTTATTTGAGAAAATTGATCGCAACAGAGATAACTTCATTTCCCAATCTGAGTTGAGAGAACTAATCATGAACATCAAATTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTCTTGTCATTGAAGAACTTGACATTGATAACGACCACATAATTAATGAGGAGGAATTTGTCGTTGGGTTTCAGAAATGGCTTGGCTCTACTTCAGCTCCTGCTCCAGTGTCACATTCTGAGCCTCAAGAAGACATGTATCAGACCTGGGAAGAGGCTGACATGGTGGTGGAAGAGATGCAAAGTAAAGCAGTAGTTGACAAATCAATTAGGGCATGGCTTAAGGCCATATTATATGTGGTGCTAGGAATTGCTATGCTATCCATTTTGGCAGAGCCTCTGACAGAAAGTGTCCACAACTTCTCTAAAGGTGTAGGACTCCATCCATTCTTCATGTCATTCATTCTAGTCCCCTTGGCCACAAATGCTAGAGAAGCAGCTTCAGCAATCAAAGAAGTAAGAGATAAGAAGCCTAGAACCACCTCTCTTGCCATTTCTGAGATATATGGAGGAGTATTCATGAATAACATTCTTGGCTTCTTAGCAATCTCAGTTCTGATCTTAGTGGGACAAGTGACTTGGGAATTCTCAGCTGAATTTCTGGTTGTTGCTATTGTTTGTGCTATAACAGGCATTGCTGCAAGTTTTCACTCCGTTTTTCCTCTATATTCAGCAGTTTTTGCAATCCTCTTGTACCCATTTTCCTTGGTTCTGGTTTTTGTACTTGACCAAGTTCTTAACTATAATTAA 1284 0.3855 MIFEPWVQKRRLEYVKHDHLILRILQHVHKNTLQRIFTTNGTPNVSAIRQLYKEIDQDGSSGISASEVKDLLLKNKVTETNFNEEKEIEEVLRIFDLDGDKKITKEEFVSGFTKWLEQTKHALETQNFILASNNVESIDSDVVGSLLTVDGKPDEHAIRRLFEKIDRNRDNFISQSELRELIMNIKFVKASMEVEEAVALVIEELDIDNDHIINEEEFVVGFQKWLGSTSAPAPVSHSEPQEDMYQTWEEADMVVEEMQSKAVVDKSIRAWLKAILYVVLGIAMLSILAEPLTESVHNFSKGVGLHPFFMSFILVPLATNAREAASAIKEVRDKKPRTTSLAISEIYGGVFMNNILGFLAISVLILVGQVTWEFSAEFLVVAIVCAITGIAASFHSVFPLYSAVFAILLYPFSLVLVFVLDQVLNYN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01366 427 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
Spst5g01366 427 ProSiteProfiles EF-hand calcium-binding domain profile. 193 228 IPR002048 GO:0005509
Spst5g01366 427 CDD EFh 158 223 IPR002048 GO:0005509
Spst5g01366 427 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Spst5g01366 427 CDD EFh 48 113 IPR002048 GO:0005509
Spst5g01366 427 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 160 419 IPR004713 GO:0006812|GO:0008324|GO:0016020
Spst5g01366 427 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Spst5g01366 427 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Spst5g01366 427 Pfam EF-hand domain pair 157 220 IPR002048 GO:0005509
Spst5g01366 427 Pfam EF-hand domain pair 47 110 IPR002048 GO:0005509
Spst5g01366 427 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Spst5g01366 427 SMART efh_1 197 225 IPR002048 GO:0005509
Spst5g01366 427 SMART efh_1 47 75 IPR002048 GO:0005509
Spst5g01366 427 SMART efh_1 87 115 IPR002048 GO:0005509
Spst5g01366 427 SMART efh_1 157 185 IPR002048 GO:0005509
Spst5g01366 427 Pfam Sodium/calcium exchanger protein 275 418 IPR004837 GO:0016020|GO:0055085
Spst5g01366 427 Gene3D - 3 127 - -
Spst5g01366 427 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Spst5g01366 427 Gene3D - 130 229 - -
Spst5g01366 427 SUPERFAMILY EF-hand 45 229 IPR011992 -
Spst5g01366 427 Gene3D - 254 421 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01366 Spst-Chr5 35186656 35189413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01366 112 427 EF-hand Containing Proteins AT1G53210 37.160 5.10e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01366 - - pvu:PHAVU_005G068200g 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01366 5 35186656 35189413 Spst5g01366 5 35186656 35189413 ECH