Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01362 ATGTCTCCGTATCTCACTTCCCACCGGTCCTTCTTCCTCATCCTCTGGATTATCATCCTGTGTGGTTACGCCCACGCGCGCTTCTTCTCCCGCGATCCGCTCTCCGACGGCGTCTCCGCCAACAGCTGGGAGGGCATCCTCCGCCTCCCCTCGGCGATCACGGCTGAGTCCACCTGCGAGCAGACCTACGGATTCCTACCCTGCACCACCACCGTGCTCGGTAACCTGTTCCTCATCATCGTCTATGGATTCCTCATGTTCAAGGCCGCGACGTTCCTCTCCGGCGGCAGCGAGCTCCTGCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTCCTCCCCATTCTCGGTGCACTTCCCGATGCCATGCTCATCCTCGTGTCTGGGCTTTCAGGCAGTAAAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGGTCAACGGTGCTGCTTCTTACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGACATCGAGGGTTCAATTGCAATAGATTCACGAGACACCAGAGGATTTAGTTTAACTGGTTCTGGTGTTAGTACTGATATCTGGACAAGTTATGCTGCACGGATTATGGTTATATCTGTCCTTCCCTTTGTGATCGTTCAGTTACCACAAATTCTCAATTCAACATCAGGAAGGCACTTGGCTGTTTTGATAGCTCTCATCGTGTCTCTCTGTTTATTGGTTGCTTATTGTCTTTACCAGATTTTCCAGCCCTGGATACAGAGGAGGAAGCTTGAATATATTAAACACAAGCATGTTATCTTAGGACTTTTGACACATTTGAAGAAACGTGCATTGGGAAGGCTTCTGAAAGATGATGGTGAACCTGATAAAGAAGTCATTAGAAAATTGTTTGCAACAATTGATGAAAATCAAGATGGCAATCTTACTCATAATGAATTGAGAGCACTAGTTATTGGAATTCAATTTGAGGAGATAGACCTGGATCATGATGATGCTGTAAAAAGGATCATGGATGATTTTGATACTTCTGGCAATCGACTTGTTGATGAAGAAGAATTTGTTAATGGTGTCTGTAGATGGCTTCTGAGGGCCCAGCGTGCTCGGGTTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTAATTTTCACACAGAAACAAAGAGGGAACATGATTTGCTGGATGTGGGAGATCAGAGTAATGAAGAAGCTGAGGGCATTGAGAATGTTAAATGGACATCCATCAAAGCAGTTCTGCTTCTGCTACTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTGGTTGATGCAGTGGATAACTTTTCTGATGCTACAAGTATTCCAGCTTTCTTCATTTCTTTCATTGCTCTTCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCAGCAATAATTTTTGCTAGTCGGGATAAAAGGCAGACTGCTTCATTAACTTTTTCTGAGATATATGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTCTTGGCCCTGGTTTATGTGAGGGGATTGACATGGGACTTCTCTTCAGAAGTGTTGGTTATTTTGGTCGTTTGCATTGTGGTGGGTGTCTTTGCCAGCTTCCGCACTGTCTTCCCTCTATGGACATCTATACTGGCTATCCTACTTTACCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1731 0.457 MSPYLTSHRSFFLILWIIILCGYAHARFFSRDPLSDGVSANSWEGILRLPSAITAESTCEQTYGFLPCTTTVLGNLFLIIVYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEGSIAIDSRDTRGFSLTGSGVSTDIWTSYAARIMVISVLPFVIVQLPQILNSTSGRHLAVLIALIVSLCLLVAYCLYQIFQPWIQRRKLEYIKHKHVILGLLTHLKKRALGRLLKDDGEPDKEVIRKLFATIDENQDGNLTHNELRALVIGIQFEEIDLDHDDAVKRIMDDFDTSGNRLVDEEEFVNGVCRWLLRAQRARVASGDAGPHTMKFLSNFHTETKREHDLLDVGDQSNEEAEGIENVKWTSIKAVLLLLLGTIIAAAFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILVVCIVVGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01362 576 ProSitePatterns EF-hand calcium-binding domain. 305 317 IPR018247 -
Spst5g01362 576 ProSiteProfiles EF-hand calcium-binding domain profile. 292 327 IPR002048 GO:0005509
Spst5g01362 576 Gene3D - 411 569 IPR044880 -
Spst5g01362 576 Gene3D - 249 374 - -
Spst5g01362 576 Pfam Sodium/calcium exchanger protein 423 567 IPR004837 GO:0016020|GO:0055085
Spst5g01362 576 Pfam Sodium/calcium exchanger protein 77 253 IPR004837 GO:0016020|GO:0055085
Spst5g01362 576 CDD EFh 297 361 IPR002048 GO:0005509
Spst5g01362 576 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Spst5g01362 576 SMART efh_1 336 364 IPR002048 GO:0005509
Spst5g01362 576 SMART efh_1 296 324 IPR002048 GO:0005509
Spst5g01362 576 SUPERFAMILY EF-hand 291 364 IPR011992 -
Spst5g01362 576 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Spst5g01362 576 FunFam Sodium/calcium exchanger NCL2 412 569 - -
Spst5g01362 576 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 62 568 IPR004713 GO:0006812|GO:0008324|GO:0016020
Spst5g01362 576 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 269 391 - -
Spst5g01362 576 Pfam EF-hand domain pair 295 359 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01362 Spst-Chr5 34364373 34370692 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01362 24 576 EF-hand Containing Proteins AT1G53210 67.544 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01362 - - gmx:100809896 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01362 5 34364373 34370692 Spst5g01362 5 34364373 34370692 ECH