Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01313 ATGGCCACTTCTCACAAGGTCTTGGTTCCAATCGCCGACGGCTCCGAGCCCATGGAGGCTGTCATCATCGTCGACGTCCTCCGCCGCGCCGGTGCTGAAGTCACTGTTGCCTCCGCCTCTACCAACCTTTCCGTCCTAGCTTGCCACGATGTTAAGATCCTTGCAGATGCCTCCGTCTCCGACGTCGCCGGAACCGCCTTTGACCTCGTCGCAATCCCTGGAGGGATACCGGGTGTTGAGAATCTGAGGGACTGTAAAGTTTTGGAAGGGTTGGTGAAGAATCATGTGGAGGAAGGACGGCTTTATGCTGCGGTGTGTGCTGCTCCTGTGGTGGTGCTTGGGCCTTGGGGTTTGCTGAATGGATTGAAGGCAACTTGTTTTCCTGCGTTGATGGAGAAATTGGCCTCTTACGCAGCCACTACTGTCGAGTCTAGGGTGCAAGTGGATGGCAGAGTAGTGACCAGTCGAGCGCCGGGAACTACCATGGAGTTCGCTCTTGCGCTGATTGAGCAGTTAATTGGAAAAGAGAAAGCGGATGAAGTTGCTGGTCCACTGGTCATGCGTTCCAATCATGATGATGAACACACTTTCAAGGAGTTTAACCCAGTGCAGTGGACATTTGACAATCCACCCAGGATTCTTGTACCAATTGCTAATGGTTCAGAGGAAATGGAAGCGGTGATTATCATTAATATGCTGCGAAGAGCAAAGGCAAATGTTGTGGTTGCTTCTGTTGAGAATAAACTTGAGATTGTGGCATCACGCAAAGTTAAACTGGAGGCAGATATGCTCCTTGACGAAGCTGCCAAACTTTCATATGACCTTATTGTGTTACCTGGCGGACTGGGTGGTGCCCAAGCATTTGCAAACTCAGAAACCTTGGTGAATTTGCTGAAAAAACAAAGTGAATCAAACAGATATTATGGAGCAATTTGTGCATCCCCCGCTTTAGTCTTGGAGTCCCACGGTTTGCTTAAGGGTAAAAAGGCCACTGCCTTTCCTGCAATGTGCAACAAGTTATCTGATCAAAGTGAAGTAGAAAACAGGGTGGTAGTTGATGGGAATCTCATTACGAGTAGAGGCCCAGGAACCTCCATTGAGTTTGCATTAGCTATTGTGGAGAAGCTGTTTGGAAGCAAGTTAGCATTAGAACTTTCCAGGGCAGTAGTGTTCGCAAACCCATAG 1185 0.4903 MATSHKVLVPIADGSEPMEAVIIVDVLRRAGAEVTVASASTNLSVLACHDVKILADASVSDVAGTAFDLVAIPGGIPGVENLRDCKVLEGLVKNHVEEGRLYAAVCAAPVVVLGPWGLLNGLKATCFPALMEKLASYAATTVESRVQVDGRVVTSRAPGTTMEFALALIEQLIGKEKADEVAGPLVMRSNHDDEHTFKEFNPVQWTFDNPPRILVPIANGSEEMEAVIIINMLRRAKANVVVASVENKLEIVASRKVKLEADMLLDEAAKLSYDLIVLPGGLGGAQAFANSETLVNLLKKQSESNRYYGAICASPALVLESHGLLKGKKATAFPAMCNKLSDQSEVENRVVVDGNLITSRGPGTSIEFALAIVEKLFGSKLALELSRAVVFANP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01313 394 FunFam Protein DJ-1 homolog C 205 394 - -
Spst5g01313 394 NCBIfam DJ-1 family protein 212 386 IPR006287 -
Spst5g01313 394 NCBIfam DJ-1 family protein 6 183 IPR006287 -
Spst5g01313 394 CDD GATase1_DJ-1 7 172 - -
Spst5g01313 394 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 5 185 - -
Spst5g01313 394 Coils Coil 242 262 - -
Spst5g01313 394 SUPERFAMILY Class I glutamine amidotransferase-like 5 192 IPR029062 -
Spst5g01313 394 Gene3D - 1 200 IPR029062 -
Spst5g01313 394 Gene3D - 207 393 IPR029062 -
Spst5g01313 394 FunFam Protein DJ-1 homolog C 1 190 - -
Spst5g01313 394 Pfam DJ-1/PfpI family 212 374 IPR002818 -
Spst5g01313 394 Pfam DJ-1/PfpI family 5 171 IPR002818 -
Spst5g01313 394 CDD GATase1_DJ-1 213 376 - -
Spst5g01313 394 SUPERFAMILY Class I glutamine amidotransferase-like 210 391 IPR029062 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01313 Spst-Chr5 26989736 26998539 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01313 K03152 - gmx:100803116 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01313 5 26989736 26998539 Spst5g01313 5 26989736 26998539 ECH